CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05486
KXG26770

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	EES05486	AT4G21670.1	18541146
AT1G20110.1	KXG26770	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021878_P003	Maize	cytosol	82.58	81.37
TraesCS2B01G223000.1	Wheat	cytosol	71.35	75.9
TraesCS2D01G203300.1	Wheat	cytosol	67.42	71.71
HORVU2Hr1G037770.2	Barley	cytosol	65.73	69.92
TraesCS2A01G184400.2	Wheat	cytosol	64.98	69.12
Os07t0573300-01	Rice	cytosol	66.67	68.86
GSMUA_Achr1P27620_001	Banana	cytosol	15.54	62.41
CDY29372	Canola	cytosol	23.41	61.88
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	17.79	61.29
KRH05975	Soybean	cytosol	37.27	60.86
Bra025793.1-P	Field mustard	cytosol	22.85	60.7
GSMUA_Achr1P27690_001	Banana	mitochondrion	22.66	60.2
OQU77119	Sorghum	cytosol	51.5	54.67
CDY44204	Canola	cytosol	39.14	53.59
GSMUA_Achr8P33940_001	Banana	cytosol	51.87	53.17
KRH61022	Soybean	nucleus	49.63	50.48
CDY54337	Canola	cytosol	51.12	49.01
CDY62935	Canola	cytosol	50.19	48.46
KRH17455	Soybean	extracellular	14.61	48.45
KRH51684	Soybean	cytosol	49.63	48.36
Bra016476.1-P	Field mustard	cytosol	49.81	48.1
VIT_18s0001g14750.t01	Wine grape	cytosol	50.94	46.5
AT1G20110.1	Thale cress	cytosol	51.87	46.09
KRH45071	Soybean	cytosol, nucleus, plastid	6.37	44.74
Solyc04g081750.2.1	Tomato	cytosol	46.25	43.87
PGSC0003DMT400025563	Potato	cytosol	45.69	43.34
GSMUA_Achr1P26420_001	Banana	cytosol	38.76	40.91
CDY43412	Canola	nucleus	33.15	32.3
CDY37424	Canola	extracellular	17.04	32.04
OQU88236	Sorghum	nucleus	12.92	6.53
EES05335	Sorghum	plastid	12.17	5.89

Protein Annotations

MapMan:22.5.4.3.7	Gene3D:3.30.40.10	EntrezGene:8055675	UniProt:C5XCB9	ncoils:Coil	EnsemblPlants:EER97421
ProteinID:EER97421	ProteinID:EER97421.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083
InterPro:IPR017455	PFAM:PF01363	PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	SMART:SM00064
EnsemblPlantsGene:SORBI_3002G348600	SUPFAM:SSF50729	SUPFAM:SSF57903	unigene:Sbi.2327	UniParc:UPI0001A83743	RefSeq:XP_002460900.1
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:71356606..71361828

Molecular Weight (calculated)

56766.5 Da

IEP (calculated)

6.239

GRAVY (calculated)

-0.641

Length

534 amino acids

Sequence
(BLAST)

001: MQHGSGDYAS SAPSGHYYQH QYAPPGSNPY PAATDAPAPG AVAGGYASAP PYSLGGGYPD QPPSAPAYSQ PPSAPAYSQP PPQPQHGAGY TPYNTNPTTY
101: PPEAYYSYTP PPTQTTAPPP AEPNPVPLPY DAPYYGGGYQ PPATGYDNED YLNEGAYAYS GGRGSEPYGA RGTAPARSGS ALFDDYGRSI SAPSDDYGRS
201: ISAQSGWEEQ SWGSGGGGGG GGSYGVIAKA LPKAETHEDA SGGAQKFRVK LLPEGVGNPT DVLCQIGLDG IRMLDPSTGR TLRIYPLDSL TRWEVLDASI
301: FAFWAKTSVD VEPKRIRLKS SSYTSNTMLD TVTAATVQFK EIGGDARSKG AVETGKPSVQ SNEKKKGFDW MFTKPVDEVK DHWVPDEVAK KCHSCAVDFS
401: PFNRRHHCRN CGEIFCDKCS QGRIALTAED NAPLVRVCDR CMAEVTQRLS IAKEAANRSA TVQSHEDLAR KLKEEMEKNR KSSGPASGGG SSGTRMREVA
501: CPTCTVHLQV QVPTSGSETV ECGVCQHAFL VSAN

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.