Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra016476.1-P Field mustard cytosol 89.69 89.69
CDY29372 Canola cytosol 32.01 87.62
CDY54337 Canola cytosol 82.28 81.69
GSMUA_Achr1P27620_001 Banana cytosol 17.9 74.44
CDY44204 Canola cytosol 51.72 73.33
GSMUA_Achr1P27590_001 Banana cytosol, nucleus, plastid 19.89 70.97
GSMUA_Achr1P27690_001 Banana mitochondrion 25.14 69.15
AT1G20110.1 Thale cress cytosol 68.17 62.73
Os06t0724100-01 Rice cytosol 49.73 56.35
GSMUA_Achr8P33940_001 Banana cytosol 50.99 54.13
TraesCS2B01G223000.1 Wheat cytosol 48.64 53.59
KRH17455 Soybean extracellular 15.55 53.42
Os07t0573300-01 Rice cytosol 49.73 53.19
HORVU2Hr1G037770.2 Barley cytosol 47.92 52.79
TraesCS2D01G203300.1 Wheat cytosol 47.74 52.59
TraesCS2A01G184400.2 Wheat cytosol 47.74 52.59
OQU77119 Sorghum cytosol 47.2 51.89
EER97421 Sorghum cytosol 48.46 50.19
TraesCS7D01G528300.1 Wheat cytosol 45.93 49.9
Zm00001d021878_P003 Maize cytosol 48.1 49.08
Zm00001d014808_P001 Maize extracellular 32.37 47.35
CDY43412 Canola nucleus 44.3 44.71
GSMUA_Achr1P26420_001 Banana cytosol 40.87 44.66
CDY37424 Canola extracellular 19.71 38.38
CDY25311 Canola cytosol, plastid 10.13 5.42
CDY52319 Canola plastid 9.22 5.06
Protein Annotations
MapMan:22.5.4.3.7Gene3D:3.30.40.10GO:A0A078JB81UniProt:A0A078JB81EnsemblPlants:CDY62935ProteinID:CDY62935
ProteinID:CDY62935.1ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0046872EnsemblPlantsGene:GSBRNA2T00037774001
InterPro:IPR013083InterPro:IPR017455PFAM:PF01363PFscan:PS50178PANTHER:PTHR22835PANTHER:PTHR22835:SF473
SMART:SM00064SUPFAM:SSF57903UniParc:UPI0004EDBBAAInterPro:Znf_FYVEInterPro:Znf_FYVE-relInterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
BnaA08g31140DBnaA08g31140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JB81]
Coordinates
chrLK034221:-:477..3643
Molecular Weight (calculated)
59583.7 Da
IEP (calculated)
7.278
GRAVY (calculated)
-0.768
Length
553 amino acids
Sequence
(BLAST)
001: MQPGGDYNSY YHHHHQYPPQ FPNPSPNPSP NPTDLAQNTY ASAPPFTGGY GAGDYSQNYQ PPYGVQNTEH VPPPSAPPSF PPPATNPNSY SALNQPPPIH
101: PPAPSSYGSS APPYTSPPPM YYPPFDPPPS SAPAPNPNPL VHAPQQPYSS SYSSTPSYGD YGRSESSASD LYGKRSGSGG GGGGYPAFED SSSYGDGVYP
201: YSGGGKVEPY GSRGTAPKSS NSTLFDDYGR PISVSDSSSS AGSKSAKIAR AVPKADVQED ASGGVQKFRV KLLAETYGQT TTDVLCQIGL DGLRMLDPSS
301: SRTLRIYPLE NITRCEKLDS SILAFWSKTP VDFEAKRIRL QSNSYTTNTL LDTVTAAMFQ AKEIGGSSRP PVSAKLVEQS AEKKKGLGDW MNKIKPVNEE
401: KDHWVPDEAV SKCTSCGSDF GAFNRRHHCR NCGDVFCDKC TQGRIALTAE ENAPQVRVCD RCMAEVSQRL SNAKESASRN MSLQSHEDLA RKLQEEMQRN
501: RKSSSGSREG SGRRMKEVAC PTCTVHLQVQ VPSSGSETIE CGVCQNPFLV SSH
Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)
001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H
Arabidopsis Description
FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.