Factsheet for GSMUA_Achr1P27590_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr8P14120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr8P14120_001	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P27620_001	Banana	cytosol	79.35	92.48
GSMUA_Achr1P27690_001	Banana	mitochondrion	76.77	59.2
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	21.94	38.2
KRH45071	Soybean	cytosol, nucleus, plastid	17.42	35.53
KRH05975	Soybean	cytosol	61.29	29.05
CDY44204	Canola	cytosol	67.1	26.67
GSMUA_Achr8P33940_001	Banana	cytosol	76.13	22.65
Bra025793.1-P	Field mustard	cytosol	29.03	22.39
CDY29372	Canola	cytosol	29.03	22.28
KRH61022	Soybean	nucleus	68.39	20.19
Bra016476.1-P	Field mustard	cytosol	70.97	19.89
CDY62935	Canola	cytosol	70.97	19.89
CDY54337	Canola	cytosol	69.03	19.21
KRH51684	Soybean	cytosol	67.74	19.16
GSMUA_Achr1P26420_001	Banana	cytosol	61.29	18.77
TraesCS2D01G203300.1	Wheat	cytosol	59.35	18.33
TraesCS2B01G223000.1	Wheat	cytosol	59.35	18.33
TraesCS2A01G184400.2	Wheat	cytosol	59.35	18.33
HORVU2Hr1G037770.2	Barley	cytosol	59.35	18.33
OQU77119	Sorghum	cytosol	59.35	18.29
Os06t0724100-01	Rice	cytosol	56.13	17.83
EER97421	Sorghum	cytosol	61.29	17.79
AT1G20110.1	Thale cress	cytosol	68.39	17.64
TraesCS7D01G528300.1	Wheat	cytosol	57.42	17.49
Os07t0573300-01	Rice	cytosol	58.06	17.41
PGSC0003DMT400025563	Potato	cytosol	62.58	17.23
Solyc04g081750.2.1	Tomato	cytosol	62.58	17.23
VIT_18s0001g14750.t01	Wine grape	cytosol	64.52	17.09
Zm00001d021878_P003	Maize	cytosol	58.71	16.79
GSMUA_Achr7P20360_001	Banana	extracellular	10.32	15.38
CDY43412	Canola	nucleus	45.16	12.77
GSMUA_Achr1P27610_001	Banana	cytosol	5.81	12.68
CDY37424	Canola	extracellular	22.58	12.32
Zm00001d014808_P001	Maize	extracellular	27.74	11.38
KRH17455	Soybean	extracellular	5.16	4.97
GSMUA_Achr5P22350_001	Banana	cytosol	18.06	2.61
GSMUA_Achr7P20370_001	Banana	nucleus	14.84	2.2

Protein Annotations

EnsemblPlants:GSMUA_Achr1P27590_001	EnsemblPlants:GSMUA_Achr1T27590_001	EnsemblPlantsGene:GSMUA_Achr1G27590_001	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013083	InterPro:IPR017455	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	PFAM:PF01363	PFscan:PS50178
SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI0002952F0E	UniProt:M0S3L6	MapMan:22.5.4.3.7	:

Description

zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G27590_001]

Coordinates

chr1:-:24808277..24810937

Molecular Weight (calculated)

17159.1 Da

IEP (calculated)

7.410

GRAVY (calculated)

-0.772

Length

155 amino acids

Sequence
(BLAST)

001: MGGNGSQTRG EEAADASKVS DQSAERKKSL VDWMNLIKPA NEEKDHWVPD EVVSKCTSCG SDFGAFNHRH HCRNCGDIFC DKCTKGRIAL TAEENAQQVR
101: VCDRCMAEVS QRLSNAKEAV SKPTGLQSHE DLARRLQELN KNHKSVQILM SLGSQ

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.