CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX94046
CDX98696
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	CDX76438	AT4G21670.1	18541146
AT1G20110.1	CDX79083	AT4G21670.1	18541146
AT1G20110.1	CDX94046	AT4G21670.1	18541146
AT1G20110.1	CDX98696	AT4G21670.1	18541146
AT1G20110.1	CDY31421	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025793.1-P	Field mustard	cytosol	96.53	97.01
KRH17455	Soybean	extracellular	37.13	46.58
CDY44204	Canola	cytosol	77.23	40.0
GSMUA_Achr1P27620_001	Banana	cytosol	21.78	33.08
CDY62935	Canola	cytosol	87.62	32.01
CDY54337	Canola	cytosol	87.62	31.78
AT1G20110.1	Thale cress	cytosol	88.12	29.62
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	22.28	29.03
GSMUA_Achr1P27690_001	Banana	mitochondrion	28.71	28.86
Zm00001d014808_P001	Maize	extracellular	53.96	28.84
Os06t0724100-01	Rice	cytosol	64.36	26.64
GSMUA_Achr8P33940_001	Banana	cytosol	67.33	26.1
OQU77119	Sorghum	cytosol	64.36	25.84
Os07t0573300-01	Rice	cytosol	65.35	25.53
TraesCS2B01G223000.1	Wheat	cytosol	63.37	25.5
TraesCS2A01G184400.2	Wheat	cytosol	63.37	25.5
HORVU2Hr1G037770.2	Barley	cytosol	62.38	25.1
TraesCS2D01G203300.1	Wheat	cytosol	61.88	24.9
TraesCS7D01G528300.1	Wheat	cytosol	60.89	24.16
GSMUA_Achr1P26420_001	Banana	cytosol	59.41	23.72
EER97421	Sorghum	cytosol	61.88	23.41
Zm00001d021878_P003	Maize	cytosol	61.88	23.06
CDY43412	Canola	nucleus	46.53	17.15
CDY37424	Canola	extracellular	16.34	11.62
CDY52319	Canola	plastid	10.4	2.09
CDY25311	Canola	cytosol, plastid	10.4	2.03

Protein Annotations

EnsemblPlants:CDY29372	EnsemblPlantsGene:GSBRNA2T00042951001	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR013083	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	ProteinID:CDY29372
ProteinID:CDY29372.1	SUPFAM:SSF57903	UniParc:UPI0004EE8887	UniProt:A0A078GW76	MapMan:22.5.4.3.7	:

Description

BnaA06g14240DBnaA06g14240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GW76]

Coordinates

chrLK032236:-:71758..73396

Molecular Weight (calculated)

22337.8 Da

IEP (calculated)

5.356

GRAVY (calculated)

-0.246

Length

202 amino acids

Sequence
(BLAST)

001: MVEKMMEKED AAGGVQKFRV KLLAETYGQT TTDVLCQQIG LDGLCMLDPS TSRNLRIYPL ENITRCVKLD SSILAFWSKT PVDIDAKRIR LQSNSYTTNT
101: LLDTVIAAMF QAKEIGGSSR PPDSVKLVEQ SAEKKKGLGD WMNIINPVNE EKDHWVPDEA VSKCTSCGSD FGAFMRRVQV PISGSETIEC GVCQNPFLVT
201: AH

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.