Factsheet for Bra025793.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013546.1-P
Bra020905.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	Bra013546.1-P	AT4G21670.1	18541146
AT1G20110.1	Bra020905.1-P	AT4G21670.1	18541146
AT1G20110.1	Bra038764.1-P	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29372	Canola	cytosol	97.01	96.53
KRH17455	Soybean	extracellular	36.82	45.96
GSMUA_Achr1P27620_001	Banana	cytosol	21.89	33.08
Bra016476.1-P	Field mustard	cytosol	86.57	31.46
AT1G20110.1	Thale cress	cytosol	87.56	29.28
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	22.39	29.03
GSMUA_Achr1P27690_001	Banana	mitochondrion	28.86	28.86
Zm00001d014808_P001	Maize	extracellular	53.23	28.31
Os06t0724100-01	Rice	cytosol	63.68	26.23
GSMUA_Achr8P33940_001	Banana	cytosol	67.16	25.91
OQU77119	Sorghum	cytosol	63.68	25.45
Os07t0573300-01	Rice	cytosol	64.18	24.95
TraesCS2A01G184400.2	Wheat	cytosol	62.19	24.9
TraesCS2B01G223000.1	Wheat	cytosol	62.19	24.9
PGSC0003DMT400025563	Potato	cytosol	68.66	24.51
HORVU2Hr1G037770.2	Barley	cytosol	61.19	24.5
Solyc04g081750.2.1	Tomato	cytosol	68.16	24.33
TraesCS2D01G203300.1	Wheat	cytosol	60.7	24.3
VIT_18s0001g14750.t01	Wine grape	cytosol	70.65	24.27
TraesCS7D01G528300.1	Wheat	cytosol	60.2	23.77
GSMUA_Achr1P26420_001	Banana	cytosol	59.7	23.72
EER97421	Sorghum	cytosol	60.7	22.85
Zm00001d021878_P003	Maize	cytosol	60.7	22.51
Bra031406.1-P	Field mustard	nucleus	11.44	2.52
Bra031405.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra025793.1	EnsemblPlants:Bra025793.1-P	EnsemblPlantsGene:Bra025793	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013083	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473
SUPFAM:SSF57903	UniParc:UPI000253EEF3	UniProt:M4EAI5	MapMan:22.5.4.3.7	:	:

Description

AT1G20110 (E=4e-087) | zinc finger (FYVE type) family protein

Coordinates

chrA06:+:8040545..8042126

Molecular Weight (calculated)

22209.7 Da

IEP (calculated)

5.356

GRAVY (calculated)

-0.229

Length

201 amino acids

Sequence
(BLAST)

001: MVEKMMEKED AAGGVQKFRV KLLAETYGQT TTDVLCQIGL DGLCMLDPST SRNLRIYPLE NITRCVKLDS SILAFWSKTP VDIDAKRIRL QSNSYTTNTL
101: LDTVIAAMFQ AKEIGGSSRP PDSVKLVEQS AEKKKGLGDW MNIINPVNEE KDHWVPDEAV SKCTSCGSDF GAFMRRVQVP ISGSETIECG VCQNPFLVTA
201: H

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.