Factsheet for PGSC0003DMT400025563

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400057635

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	PGSC0003DMT400057635	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081750.2.1	Tomato	cytosol	88.28	88.28
Bra025793.1-P	Field mustard	cytosol	24.51	68.66
KRH05975	Soybean	cytosol	39.79	68.5
GSMUA_Achr1P27620_001	Banana	cytosol	15.28	64.66
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	17.23	62.58
GSMUA_Achr1P27690_001	Banana	mitochondrion	22.02	61.69
KRH61022	Soybean	nucleus	56.13	60.19
KRH51684	Soybean	cytosol	54.53	56.02
VIT_18s0001g14750.t01	Wine grape	cytosol	57.02	54.87
Bra016476.1-P	Field mustard	cytosol	53.64	54.61
GSMUA_Achr8P33940_001	Banana	cytosol	49.02	52.98
KRH45071	Soybean	cytosol, nucleus, plastid	7.1	52.63
Os06t0724100-01	Rice	cytosol	45.12	52.05
AT1G20110.1	Thale cress	cytosol	55.42	51.91
OQU77119	Sorghum	cytosol	44.58	49.9
TraesCS2B01G223000.1	Wheat	cytosol	44.05	49.4
Os07t0573300-01	Rice	cytosol	45.29	49.32
TraesCS2D01G203300.1	Wheat	cytosol	43.87	49.2
PGSC0003DMT400061372	Potato	cytosol	41.03	49.04
PGSC0003DMT400009233	Potato	cytosol	45.83	48.96
TraesCS2A01G184400.2	Wheat	cytosol	43.52	48.8
HORVU2Hr1G037770.2	Barley	cytosol	43.34	48.61
TraesCS7D01G528300.1	Wheat	cytosol	43.52	48.13
Zm00001d014808_P001	Maize	extracellular	30.73	45.77
EER97421	Sorghum	cytosol	43.34	45.69
Zm00001d021878_P003	Maize	cytosol	43.52	45.2
GSMUA_Achr1P26420_001	Banana	cytosol	40.14	44.66
CDY37424	Canola	extracellular	16.16	32.04
PGSC0003DMT400055915	Potato	cytosol	10.66	5.74

Protein Annotations

EntrezGene:102605585	MapMan:22.5.4.3.7	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0000813	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0031902	GO:GO:0036258	GO:GO:0043130
GO:GO:0046872	GO:GO:0055072	GO:GO:0070676	InterPro:IPR013083	InterPro:IPR017455	UniProt:M1ALM1
PFAM:PF01363	EnsemblPlantsGene:PGSC0003DMG400009878	PGSC:PGSC0003DMG400009878	EnsemblPlants:PGSC0003DMT400025563	PFscan:PS50178	PANTHER:PTHR22835
PANTHER:PTHR22835:SF473	SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI0002950D57	RefSeq:XP_006342069.1	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009878]

Coordinates

chr4:+:71085016..71093891

Molecular Weight (calculated)

61728.0 Da

IEP (calculated)

7.434

GRAVY (calculated)

-0.802

Length

563 amino acids

Sequence
(BLAST)

001: MQQGDYTTSN PYYNYPNSGQ ISPAPIPNPT PSPPAYASAP PFAATYTPPS DYSSYPSSYP NHYTQNPDFP STAPAPPLQT YNPPPPAQVP VPALQQPQHS
101: SPFPSFESHG AYQNPVHSQP QQSYYPPYDQ PQAAPSYNHS PTPNSSYPSV YSTPNYDNTG KFDQSGQYFD EPVDKYGNYG SRRGEFGQDT YGKRAESGYG
201: NDGYGDGVFA YQGSKVEPYG ARGTGSKSST WSSSFDDFGR PIGYNSPKER SSAPTAKIVK AIPKVDTQQD ARSGVQKFRV KLLAESGGQS TQDVLCQIGL
301: DGIRMLDPST SRMLRIYPLD TVTRLEAADS STFAFWSKSA VDIEPRRIRL QSNSYTTSSL LDTVTAAVVQ FKEMGGRIRS SESPKVAEQP TEKKKGLADW
401: INIVKTVNEE KDHWVPDEAV SKCTACGSAF NAFVRRHHCR NCGDIFCDKC TQGRTALTAD ENAPVVRVCD RCTAEVSRRL SSAKETVNRS TGLQSHEDLA
501: KKLQEEMERN RKGSSGSRQD RSGRMKEVAC PTCTVHLQVQ VPSSGSETIE CGVCQNPFLV SSH

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.