Factsheet for GSMUA_Achr8P33940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr8P14120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr8P14120_001	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P27620_001	Banana	cytosol	20.35	79.7
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	13.05	76.4
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	22.65	76.13
GSMUA_Achr1P27690_001	Banana	mitochondrion	29.17	75.62
CDY29372	Canola	cytosol	26.1	67.33
Bra025793.1-P	Field mustard	cytosol	25.91	67.16
KRH05975	Soybean	cytosol	42.03	66.97
GSMUA_Achr1P27610_001	Banana	cytosol	8.64	63.38
GSMUA_Achr1P26420_001	Banana	cytosol	58.54	60.28
Os06t0724100-01	Rice	cytosol	54.32	57.99
KRH61022	Soybean	nucleus	58.16	57.71
KRH51684	Soybean	cytosol	58.73	55.84
CDY44204	Canola	cytosol	41.46	55.38
OQU77119	Sorghum	cytosol	53.17	55.07
TraesCS2B01G223000.1	Wheat	cytosol	52.78	54.78
TraesCS2D01G203300.1	Wheat	cytosol	52.4	54.38
VIT_18s0001g14750.t01	Wine grape	cytosol	59.88	53.33
Os07t0573300-01	Rice	cytosol	52.78	53.19
TraesCS2A01G184400.2	Wheat	cytosol	51.06	52.99
HORVU2Hr1G037770.2	Barley	cytosol	51.06	52.99
TraesCS7D01G528300.1	Wheat	cytosol	51.06	52.26
KRH17455	Soybean	extracellular	16.12	52.17
EER97421	Sorghum	cytosol	53.17	51.87
CDY54337	Canola	cytosol	54.89	51.35
Bra016476.1-P	Field mustard	cytosol	54.13	50.99
CDY62935	Canola	cytosol	54.13	50.99
Solyc04g081750.2.1	Tomato	cytosol	54.32	50.27
Zm00001d021878_P003	Maize	cytosol	52.02	50.0
PGSC0003DMT400025563	Potato	cytosol	52.98	49.02
Zm00001d014808_P001	Maize	extracellular	35.51	48.94
KRH45071	Soybean	cytosol, nucleus, plastid	6.91	47.37
AT1G20110.1	Thale cress	cytosol	54.32	47.09
CDY43412	Canola	nucleus	32.25	30.66
CDY37424	Canola	extracellular	15.93	29.23
GSMUA_Achr7P20360_001	Banana	extracellular	4.22	21.15
GSMUA_Achr5P22350_001	Banana	cytosol	12.09	5.87
GSMUA_Achr7P20370_001	Banana	nucleus	10.94	5.45

Protein Annotations

MapMan:22.5.4.3.7	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr8G33940_001	EnsemblPlants:GSMUA_Achr8P33940_001	EnsemblPlants:GSMUA_Achr8T33940_001	InterPro:IPR013083	InterPro:IPR017455	UniProt:M0TVZ6
PFAM:PF01363	PRINTS:PR01217	PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	SMART:SM00064
SUPFAM:SSF57903	UniParc:UPI0002955F07	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G33940_001]

Coordinates

chr8:-:34845969..34853248

Molecular Weight (calculated)

56943.5 Da

IEP (calculated)

7.391

GRAVY (calculated)

-0.708

Length

521 amino acids

Sequence
(BLAST)

001: MQHGGDYGSY YAPQYPPPVS NPNPNPNPNP NPVEFPPSNP IQQPYASAPP YSTDFPAYSS AAPTPAPAPY APYSQKPEPA PPLPPSAPSY SQPQSQFPPQ
101: FPTFPTYSPS AARPDQEAQY LNDNPGMYGH GRSGFGQDFR EKNPYGGMRY DEFVPQNDGL GDGVYQYDGG RSEPYGARGT VPTRSPALFD DYGRSISFPS
201: GGKDQGGSSG KIVRAVPKVE TQQDVKHGVQ KFRVKLLPEG GGQSTMDVLC QIGLDGIRML DPSTNRTLRI YPLETVTKWE VSESSTFTFW SKSSVDFDPR
301: RIRLQSNSYT TNTILDTVTA ATFKEMGGKD SLISGRGTVD ASKLSDQSTE RKKGLVDWMT LIKPANEEKD HWVPDEAVSK CTSCGSDFGA FNRRHHCRNC
401: GDIFCDKCTK GRIALTADEI AQPVRVCDRC MAEVTRRLSN AKEAASKPAG LQTHEDLARK LQEEMDKNLK SVSKSTKVSG KGMREVACPI CTVHLQVQVP
501: ASGSETIECG VCQHPFLVSA R

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.