Factsheet for Solyc04g081750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078550.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	Solyc02g078550.2.1	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025563	Potato	cytosol	88.28	88.28
KRH05975	Soybean	cytosol	39.79	68.5
Bra025793.1-P	Field mustard	cytosol	24.33	68.16
GSMUA_Achr1P27620_001	Banana	cytosol	15.28	64.66
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	17.23	62.58
GSMUA_Achr1P27690_001	Banana	mitochondrion	22.02	61.69
KRH61022	Soybean	nucleus	57.02	61.14
KRH51684	Soybean	cytosol	55.42	56.93
VIT_18s0001g14750.t01	Wine grape	cytosol	57.37	55.21
Bra016476.1-P	Field mustard	cytosol	54.0	54.97
GSMUA_Achr8P33940_001	Banana	cytosol	50.27	54.32
Solyc02g062000.2.1	Tomato	cytosol	44.58	53.86
Os06t0724100-01	Rice	cytosol	45.83	52.87
KRH45071	Soybean	cytosol, nucleus, plastid	7.1	52.63
AT1G20110.1	Thale cress	cytosol	55.06	51.58
OQU77119	Sorghum	cytosol	45.12	50.5
TraesCS2B01G223000.1	Wheat	cytosol	44.23	49.6
Os07t0573300-01	Rice	cytosol	44.58	48.55
TraesCS2A01G184400.2	Wheat	cytosol	43.16	48.41
TraesCS2D01G203300.1	Wheat	cytosol	43.16	48.41
TraesCS7D01G528300.1	Wheat	cytosol	43.69	48.33
HORVU2Hr1G037770.2	Barley	cytosol	42.98	48.21
Zm00001d014808_P001	Maize	extracellular	31.08	46.3
EER97421	Sorghum	cytosol	43.87	46.25
GSMUA_Achr1P26420_001	Banana	cytosol	41.39	46.05
Zm00001d021878_P003	Maize	cytosol	43.34	45.02
CDY37424	Canola	extracellular	16.16	32.04
Solyc02g079850.2.1	Tomato	cytosol	10.48	6.03

Protein Annotations

MapMan:22.5.4.3.7	Gene3D:3.30.40.10	ncoils:Coil	GO:GO:0000813	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0031902	GO:GO:0036258	GO:GO:0043130	GO:GO:0046872
GO:GO:0055072	GO:GO:0070676	InterPro:IPR013083	InterPro:IPR017455	UniProt:K4BVQ4	PFAM:PF01363
PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	SMART:SM00064	SUPFAM:SSF57903	EnsemblPlantsGene:Solyc04g081750.2
EnsemblPlants:Solyc04g081750.2.1	UniParc:UPI000276626C	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Protein FREE1 [Source:Projected from Arabidopsis thaliana (AT1G20110) UniProtKB/Swiss-Prot;Acc:Q9ASS2]

Coordinates

chr4:+:65673246..65681962

Molecular Weight (calculated)

61629.0 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.785

Length

563 amino acids

Sequence
(BLAST)

001: MQQGDYTTSN PYYNYPNSGH ISPAPIPNPT PSPPSYASAP PFAATYPPSS DYSSYPSSYP NHYTQNPDLL STAPAPPLQS YNPPPPAQVP VPALQQPQHS
101: SPFPSFESHG AYQNPVHSQP QQPYYPPYDQ PQAAPSYNHS TTPNSSYPSV YSTPNYDNTG KFDQSGQYFD EPVDKYGNYG SGRGEFGQDT YGKRAESGYG
201: NDGYGDGVFA YQGSKVEPYG ARGTGSKSST WSSSFDDFGR PIGYNSPKER SSAPTAKIVK AIPKVDTQQD AKSGVQKFRV KLLAESGGQS TQDVLCQIGL
301: DGIRMLDPST SRMLRIYPLD TVTRLEATDS STFAFWSKSA VDIEPRRIRL QSNSYTTSSL LDTVTAAVVQ FKEMGGRIMS SESPKVAEQP TEKKKGLTDW
401: INIVKTVNEE KDHWVPDEAV SKCTACGSAF NAFVRRHHCR NCGDIFCDKC TQGRTALTAD ENAPVVRVCD RCTAEVSRRL SSAKETVNRS TGLQSHEDLA
501: KKLQEEMERN RKGSSGSRQD RSGRMKEVAC PTCTVHLQVQ VPSSGSETIE CGVCQNPFLV SSH

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.