CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 6
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45071	Soybean	cytosol, nucleus, plastid	10.56	39.47
GSMUA_Achr1P27690_001	Banana	mitochondrion	21.48	30.35
CDY44204	Canola	cytosol	33.8	24.62
KRH05975	Soybean	cytosol	26.06	22.63
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	12.32	22.58
GSMUA_Achr1P27620_001	Banana	cytosol	9.51	20.3
CDY62935	Canola	cytosol	38.38	19.71
CDY54337	Canola	cytosol	37.32	19.03
TraesCS2B01G223000.1	Wheat	cytosol	30.63	17.33
TraesCS2D01G203300.1	Wheat	cytosol	30.28	17.13
EER97421	Sorghum	cytosol	32.04	17.04
Os06t0724100-01	Rice	cytosol	29.23	17.01
TraesCS2A01G184400.2	Wheat	cytosol	29.93	16.93
HORVU2Hr1G037770.2	Barley	cytosol	29.93	16.93
Os07t0573300-01	Rice	cytosol	30.63	16.83
CDY29372	Canola	cytosol	11.62	16.34
KRH61022	Soybean	nucleus	29.93	16.19
PGSC0003DMT400025563	Potato	cytosol	32.04	16.16
Solyc04g081750.2.1	Tomato	cytosol	32.04	16.16
GSMUA_Achr8P33940_001	Banana	cytosol	29.23	15.93
Zm00001d021878_P003	Maize	cytosol	30.28	15.87
TraesCS7D01G528300.1	Wheat	cytosol	28.17	15.72
OQU77119	Sorghum	cytosol	27.11	15.31
KRH51684	Soybean	cytosol	28.87	14.96
VIT_18s0001g14750.t01	Wine grape	cytosol	30.63	14.87
CDY43412	Canola	nucleus	21.83	11.31
GSMUA_Achr1P26420_001	Banana	cytosol	9.51	5.34
Zm00001d014808_P001	Maize	extracellular	6.69	5.03
CDY52319	Canola	plastid	10.56	2.98
CDY25311	Canola	cytosol, plastid	10.21	2.81

Protein Annotations

KEGG:04150+2.7.11.1	KEGG:04151+2.7.11.1	KEGG:04714+2.7.11.1	KEGG:04926+2.7.11.1	KEGG:05165+2.7.11.1	Gene3D:1.20.1440.180
MapMan:22.5.4.3.7	GO:A0A078HJA1	UniProt:A0A078HJA1	EnsemblPlants:CDY37424	ProteinID:CDY37424	ProteinID:CDY37424.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0004540	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090501	EnsemblPlantsGene:GSBRNA2T00064001001
InterPro:IPR010513	InterPro:IPR038357	InterPro:KEN_dom	InterPro:KEN_sf	PFAM:PF06479	PFscan:PS51392
PANTHER:PTHR13954	UniParc:UPI0004EEF269	SEG:seg	:	:	:

Description

BnaC08g45620DBnaC08g45620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJA1]

Coordinates

chrLK032400:-:50787..53596

Molecular Weight (calculated)

32488.7 Da

IEP (calculated)

8.369

GRAVY (calculated)

-0.455

Length

284 amino acids

Sequence
(BLAST)

001: MYFFGLVFAF SITKGIEVIS SILQELHSNS RGPARALLEP FFWSTDKTVR FYNIANTLLA RTWSEDLRDS LHNLKGKVLK RPHQGWIRSL KPDFQTIVSS
101: DRRSFYDRYN ITHLVKLVRN RLAHYDQQDQ EEDEGLQEIL GTTQKDVLEY FRASFPQLLL QTYHVINKHF QTDPAFLAFA EGNAPQVPVS DQCMEKVSQR
201: LSYAKESACR NVSVQSHGDP ARKLQEEMEK NRMSSSGSRE GSGRRMKEVA CPTCTVRLQV QVPISGSETI ECVVCQNPLL VSSH

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.