Factsheet for GSMUA_Achr1P26420_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr8P14120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT1G20110.1	GSMUA_Achr8P14120_001	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P27620_001	Banana	cytosol	18.18	69.17
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	18.77	61.29
Bra025793.1-P	Field mustard	cytosol	23.72	59.7
CDY29372	Canola	cytosol	23.72	59.41
GSMUA_Achr8P33940_001	Banana	cytosol	60.28	58.54
KRH17455	Soybean	extracellular	16.01	50.31
Zm00001d014808_P001	Maize	extracellular	36.96	49.47
KRH61022	Soybean	nucleus	47.83	46.1
KRH05975	Soybean	cytosol	29.64	45.87
KRH51684	Soybean	cytosol	48.81	45.07
Os06t0724100-01	Rice	cytosol	43.28	44.88
GSMUA_Achr1P27690_001	Banana	mitochondrion	17.0	42.79
OQU77119	Sorghum	cytosol	42.49	42.74
Bra016476.1-P	Field mustard	cytosol	45.85	41.95
TraesCS2B01G223000.1	Wheat	cytosol	41.5	41.83
TraesCS2D01G203300.1	Wheat	cytosol	41.3	41.63
Os07t0573300-01	Rice	cytosol	42.49	41.59
Solyc04g081750.2.1	Tomato	cytosol	46.05	41.39
CDY44204	Canola	cytosol	31.62	41.03
CDY54337	Canola	cytosol	45.06	40.93
CDY62935	Canola	cytosol	44.66	40.87
TraesCS2A01G184400.2	Wheat	cytosol	40.51	40.84
VIT_18s0001g14750.t01	Wine grape	cytosol	47.04	40.68
HORVU2Hr1G037770.2	Barley	cytosol	40.12	40.44
PGSC0003DMT400025563	Potato	cytosol	44.66	40.14
AT1G20110.1	Thale cress	cytosol	46.84	39.43
TraesCS7D01G528300.1	Wheat	cytosol	39.33	39.1
EER97421	Sorghum	cytosol	40.91	38.76
Zm00001d021878_P003	Maize	cytosol	40.91	38.19
CDY43412	Canola	nucleus	30.04	27.74
GSMUA_Achr7P20360_001	Banana	extracellular	3.95	19.23
CDY37424	Canola	extracellular	5.34	9.51
GSMUA_Achr5P22350_001	Banana	cytosol	11.26	5.31
KRH45071	Soybean	cytosol, nucleus, plastid	0.79	5.26
GSMUA_Achr7P20370_001	Banana	nucleus	9.29	4.5
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	0.0	0.0
GSMUA_Achr1P27610_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr1P26420_001	EnsemblPlants:GSMUA_Achr1T26420_001	EnsemblPlantsGene:GSMUA_Achr1G26420_001	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013083	InterPro:IPR017455	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	PFAM:PF01363	PFscan:PS50178	SEG:seg
SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI000296BEF3	UniProt:M0S399	MapMan:22.5.4.3.7	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G26420_001]

Coordinates

chr1:+:21937950..21945451

Molecular Weight (calculated)

55178.5 Da

IEP (calculated)

5.035

GRAVY (calculated)

-0.712

Length

506 amino acids

Sequence
(BLAST)

001: MQHGSDYSSY YAPQSPPPPT NPSSVPAELP PSTPIQQLYA SAPPYSTDFP LAAAPGPAPS SYAPFSQNPE PASCLPPSVP SYGQPQSQLP PQFPSFPPYN
101: SSSYPPETSP SPTASLYPHQ QPSSVPYYPY DPNQLATGSH ASPMNPISVP TSSPNPSSSL SSPYTSYNVS QQSSAMMPEQ EAQYFNDNSG RYGASMNDGY
201: GHSRSGFGQE FHEKNLYAGM HYDEFGPQDD GLGDGVYQYD GGRSEPYGSR GTVPTRSPTL FDDYGRSVSF PSVGNNQGGS VGKIVRAVPK EDMQPDVNNG
301: QKFRVKLLLE GGGQNTTDVL CQIGLDGIRM LDPSTNRTLR IYPLETVTRW EVLDSSTFAF WSKSFVDIDP RRIRLQSNSY TTNTILDTVT AATVQLKEMG
401: GNGSLTRGEE AADASKVSDQ SAERKKSLVN WMNLIKPANE EKDHWVPDEA VSKCTSCGSD FGAFNRRHHC RNCGDIFCDK CTKGRIALTT EENAQQVRVC
501: DRCMVY

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.