Factsheet for Os06t0724100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0639000-01
Os04t0529500-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	Os02t0639000-01	AT4G21670.1	18541146
AT1G20110.1	Os04t0529500-02	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77119	Sorghum	cytosol	79.1	76.74
Zm00001d014808_P001	Maize	extracellular	56.35	72.75
TraesCS7D01G528300.1	Wheat	cytosol	72.75	69.74
KRH05975	Soybean	cytosol	43.24	64.53
CDY29372	Canola	cytosol	26.64	64.36
Bra025793.1-P	Field mustard	cytosol	26.23	63.68
GSMUA_Achr1P27620_001	Banana	cytosol	16.6	60.9
GSMUA_Achr1P27690_001	Banana	mitochondrion	24.59	59.7
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	17.83	56.13
KRH61022	Soybean	nucleus	58.81	54.67
GSMUA_Achr8P33940_001	Banana	cytosol	57.99	54.32
Os07t0573300-01	Rice	cytosol	57.17	53.97
CDY44204	Canola	cytosol	42.83	53.59
KRH17455	Soybean	extracellular	17.42	52.8
KRH51684	Soybean	cytosol	58.61	52.19
CDY62935	Canola	cytosol	56.35	49.73
Bra016476.1-P	Field mustard	cytosol	56.15	49.55
CDY54337	Canola	cytosol	55.94	49.01
VIT_18s0001g14750.t01	Wine grape	cytosol	57.17	47.69
Solyc04g081750.2.1	Tomato	cytosol	52.87	45.83
PGSC0003DMT400025563	Potato	cytosol	52.05	45.12
AT1G20110.1	Thale cress	cytosol	55.53	45.09
KRH45071	Soybean	cytosol, nucleus, plastid	6.76	43.42
GSMUA_Achr1P26420_001	Banana	cytosol	44.88	43.28
CDY43412	Canola	nucleus	35.66	31.75
CDY37424	Canola	extracellular	17.01	29.23
Os03t0669800-01	Rice	plasma membrane	10.66	5.58

Protein Annotations

MapMan:22.5.4.3.7	Gene3D:3.30.40.10	EntrezGene:4342097	EMBL:AK060793	ProteinID:BAD62529.1	ProteinID:BAS99568.1
ProteinID:EEE66375.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR017455
EnsemblPlantsGene:Os06g0724100	EnsemblPlants:Os06t0724100-01	PFAM:PF01363	PRINTS:PR01217	PFscan:PS50178	PANTHER:PTHR22835
PANTHER:PTHR22835:SF473	UniProt:Q5YLY5	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF57903	UniParc:UPI0000450871
RefSeq:XP_015643100.1	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0724100-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0724100-02)

Coordinates

chr6:+:30762490..30768122

Molecular Weight (calculated)

52737.3 Da

IEP (calculated)

7.593

GRAVY (calculated)

-0.693

Length

488 amino acids

Sequence
(BLAST)

001: MHPSGEYSPY YQPYPSPTSA PLATYPSASA PPYTPYPATD YAAPAAYPTY PPPPADPPQY APPPAAPQPQ PYYPYEPPPH NPAPSPYPSL DRAGSYGYGS
101: GSQELYPPKP AGGGWSDDGV YAYSGGGGDA PEPYGARGTA PRSNSPLFDD YGRSIGSTKE RGGGGGGGGG SSASPKVVRA VPKVETSEDT SGGVQKFRVK
201: LLPEGAGSPM DVLCQVGLDG IRMLDPNTSR TLRIYPLETV TRWDVLDSSI FAFWSKSSVD FEARRIRLKS NSYTTNTILD TVTAASVQFK EMGGSSISRS
301: RAIADAAKPP EQQNDRRKNF LDWRNLMKPM NEEKDHWVPD EAVTKCTACT ADFSAFNRRH HCRNCGDIFC DKCTQGRTPL TTDADAQPVR VCDRCMAEVS
401: QRLNNAREAA NRPIVHSHED LAKKLKDAMD INKKSSSASS RSTDGSSRRM REVACPTCTV HLQVQVPTSG SETIECGVCQ QPFLVSAR

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.