CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45071	Soybean	cytosol, nucleus, plastid	15.29	65.79
GSMUA_Achr1P27690_001	Banana	mitochondrion	39.45	64.18
GSMUA_Achr1P27620_001	Banana	cytosol	25.99	63.91
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	29.05	61.29
KRH17455	Soybean	extracellular	25.08	50.93
KRH61022	Soybean	nucleus	78.9	49.14
KRH51684	Soybean	cytosol	78.9	47.08
Os06t0724100-01	Rice	cytosol	64.53	43.24
OQU77119	Sorghum	cytosol	65.75	42.74
VIT_18s0001g14750.t01	Wine grape	cytosol	75.54	42.22
GSMUA_Achr8P33940_001	Banana	cytosol	66.97	42.03
TraesCS7D01G528300.1	Wheat	cytosol	64.83	41.65
PGSC0003DMT400025563	Potato	cytosol	68.5	39.79
Solyc04g081750.2.1	Tomato	cytosol	68.5	39.79
Os07t0573300-01	Rice	cytosol	61.16	38.68
TraesCS2B01G223000.1	Wheat	cytosol	59.33	38.65
HORVU2Hr1G037770.2	Barley	cytosol	59.33	38.65
TraesCS2A01G184400.2	Wheat	cytosol	59.33	38.65
TraesCS2D01G203300.1	Wheat	cytosol	58.41	38.05
EER97421	Sorghum	cytosol	60.86	37.27
Zm00001d021878_P003	Maize	cytosol	60.24	36.35
Zm00001d014808_P001	Maize	extracellular	37.0	32.01
GSMUA_Achr1P26420_001	Banana	cytosol	45.87	29.64
CDY37424	Canola	extracellular	22.63	26.06
KRH49913	Soybean	cytosol	10.4	2.71
KRH41976	Soybean	cytosol	10.4	2.71

Protein Annotations

MapMan:22.5.4.3.7	Gene3D:3.30.40.10	EMBL:ACUP02010784	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G259400	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	UniProt:I1MY45	InterPro:IPR013083	InterPro:IPR017455	EnsemblPlants:KRH05975
ProteinID:KRH05975	ProteinID:KRH05975.1	PFAM:PF01363	PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473
SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI00029577EC	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:41350368..41357857

Molecular Weight (calculated)

35941.0 Da

IEP (calculated)

8.078

GRAVY (calculated)

-0.442

Length

327 amino acids

Sequence
(BLAST)

001: MMTERVLAYY GGKVEPYGAI GGGGAPPPAT ATNKVVKAVP KVDAEGDAKS GVQKFRVKLL AESGGQSIID VLCQIGLDGI RMLDPNTSRT LRIYPLENIT
101: RCDSSVDVEP GRIRLLSNRY TTNTLLDTVN AATIQFKEMG GSRRPSESLR TNEQPTEKKR GFGDWMNLIK PADEEKDHWV PDEAVLKCTA CGVDFGAFLR
201: RHHCRNCGDI FCDKCTRGRI ALTSDEDALQ VRVCDRCMAE VTLRLSNAKE SSSKPVLQSH EDLAKKLQDE LERNRRISGS KSDGSGRRMK EVACPICTVH
301: LQVQVPTSGS ETIECGVCQH PFLVTAR

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.