CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
plastid 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61022	Soybean	nucleus	80.47	84.0
KRH45071	Soybean	cytosol, nucleus, plastid	11.13	80.26
KRH05975	Soybean	cytosol	47.08	78.9
GSMUA_Achr1P27620_001	Banana	cytosol	17.15	70.68
GSMUA_Achr1P27690_001	Banana	mitochondrion	25.73	70.15
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	19.16	67.74
VIT_18s0001g14750.t01	Wine grape	cytosol	66.42	62.22
GSMUA_Achr8P33940_001	Banana	cytosol	55.84	58.73
Os06t0724100-01	Rice	cytosol	52.19	58.61
KRH17455	Soybean	extracellular	16.79	57.14
Solyc04g081750.2.1	Tomato	cytosol	56.93	55.42
PGSC0003DMT400025563	Potato	cytosol	56.02	54.53
OQU77119	Sorghum	cytosol	50.0	54.47
TraesCS2A01G184400.2	Wheat	cytosol	47.08	51.39
TraesCS2B01G223000.1	Wheat	cytosol	46.9	51.2
TraesCS2D01G203300.1	Wheat	cytosol	46.53	50.8
TraesCS7D01G528300.1	Wheat	cytosol	47.08	50.69
HORVU2Hr1G037770.2	Barley	cytosol	46.35	50.6
Os07t0573300-01	Rice	cytosol	47.63	50.48
Zm00001d014808_P001	Maize	extracellular	34.31	49.74
EER97421	Sorghum	cytosol	48.36	49.63
GSMUA_Achr1P26420_001	Banana	cytosol	45.07	48.81
Zm00001d021878_P003	Maize	cytosol	47.08	47.6
CDY37424	Canola	extracellular	14.96	28.87
KRH49913	Soybean	cytosol	9.67	4.23
KRH41976	Soybean	cytosol	9.49	4.14

Protein Annotations

EntrezGene:100794840	MapMan:22.5.4.3.7	Gene3D:3.30.40.10	EMBL:ACUP02003383	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G023000
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	UniProt:I1K7I5	InterPro:IPR013083	InterPro:IPR017455
EnsemblPlants:KRH51684	ProteinID:KRH51684	ProteinID:KRH51684.1	PFAM:PF01363	PRINTS:PR01217	PFscan:PS50178
PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF57903	UniParc:UPI0002339469
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:1719639..1733826

Molecular Weight (calculated)

59986.2 Da

IEP (calculated)

6.505

GRAVY (calculated)

-0.818

Length

548 amino acids

Sequence
(BLAST)

001: MQQGDYTSAP SPYYQFPHLQ NPNPNPNPNP DPHPNNPYAS APPFTPNYAP SDYTPYPSYP QNPDPSPPTA PSFPPSSSNP NLPPPFNPPF ESNPPYQQQQ
101: PYFSPYDQHQ TPPNPNSTPS SYNPVPSPYS YSGPSSVPPI PTYEPAYEAP VRPDQGGGYF DDRYRAGFTR SHSDLGSDFY GKSGGGADDG YGDGVYAYEG
201: GKVEPYGARG TAPKSSTWAA FDDYGRSISF PSQKESSSVG GKIVKAVPKA DTQQDVKGGG VQKFRVKLLA ESGGQSTMDV LCQIGLDGIR MLDPNTSRTL
301: RIYPLENITR CDRIDSSTFA FWSKSPVDIE PRRIRLQSNS YTTNTLLDIV TAATIQFKEM GGGRRPAEAV KTNEQSSERK KGFGDWMNLI KPANEEKDHW
401: VPDEAVSKCT ACGTDFGAFV RRHHCRNCGD IFCDKCTHGR IALTADENAQ PVRVCDRCMA EVTQRLTSAK ESSSKPALQS HEDLAKKLQE ELERNQKASG
501: SKSDGSARRM KEVACPICTV HLQVQVPSSG SETIECGVCQ HPFLVSAH

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.