Factsheet for TraesCS2D01G203300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G373400.3
TraesCS2B01G390500.3
TraesCS2D01G369600.4
TraesCS6A01G235300.4
TraesCS6B01G264000.3
TraesCS6D01G218000.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	TraesCS2A01G373400.3	AT4G21670.1	18541146
AT1G20110.1	TraesCS2B01G390500.3	AT4G21670.1	18541146
AT1G20110.1	TraesCS2D01G369600.4	AT4G21670.1	18541146
AT1G20110.1	TraesCS6A01G235300.4	AT4G21670.1	18541146
AT1G20110.1	TraesCS6B01G264000.3	AT4G21670.1	18541146
AT1G20110.1	TraesCS6D01G218000.3	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G184400.2	Wheat	cytosol	91.83	91.83
HORVU2Hr1G037770.2	Barley	cytosol	91.83	91.83
TraesCS2B01G223000.1	Wheat	cytosol	90.24	90.24
Os07t0573300-01	Rice	cytosol	77.69	75.44
EER97421	Sorghum	cytosol	71.71	67.42
Zm00001d021878_P003	Maize	cytosol	71.12	65.87
CDY29372	Canola	cytosol	24.9	61.88
GSMUA_Achr1P27620_001	Banana	cytosol	16.14	60.9
Bra025793.1-P	Field mustard	cytosol	24.3	60.7
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	18.33	59.35
GSMUA_Achr1P27690_001	Banana	mitochondrion	23.51	58.71
KRH05975	Soybean	cytosol	38.05	58.41
CDY44204	Canola	cytosol	41.24	53.08
GSMUA_Achr8P33940_001	Banana	cytosol	54.38	52.4
TraesCS7D01G528300.1	Wheat	cytosol	52.99	52.26
KRH61022	Soybean	nucleus	51.39	49.14
CDY54337	Canola	cytosol	52.99	47.76
CDY62935	Canola	cytosol	52.59	47.74
Bra016476.1-P	Field mustard	cytosol	52.39	47.56
KRH51684	Soybean	cytosol	50.8	46.53
AT1G20110.1	Thale cress	cytosol	53.78	44.93
VIT_18s0001g14750.t01	Wine grape	cytosol	51.79	44.44
KRH17455	Soybean	extracellular	14.14	44.1
PGSC0003DMT400025563	Potato	cytosol	49.2	43.87
Solyc04g081750.2.1	Tomato	cytosol	48.41	43.16
KRH45071	Soybean	cytosol, nucleus, plastid	6.37	42.11
GSMUA_Achr1P26420_001	Banana	cytosol	41.63	41.3
CDY43412	Canola	nucleus	33.07	30.29
CDY37424	Canola	extracellular	17.13	30.28
TraesCS5D01G485400.1	Wheat	cytosol, plastid	12.35	5.68

Protein Annotations

EnsemblPlants:TraesCS2D01G203300.1	EnsemblPlantsGene:TraesCS2D01G203300	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR013083	InterPro:IPR017455	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	PFAM:PF01363	PFscan:PS50178	SEG:seg	SMART:SM00064
SUPFAM:SSF50729	SUPFAM:SSF57903	MapMan:22.5.4.3.7	:	:	:

Description

No Description!

Coordinates

chr2D:-:155478643..155485731

Molecular Weight (calculated)

53429.9 Da

IEP (calculated)

6.320

GRAVY (calculated)

-0.577

Length

502 amino acids

Sequence
(BLAST)

001: MQHGSGDYAS PAPAGHYYPH QYAPPGPTSH PAAADPPIPG AYASAPPYSV GGYPEQLPSA PSYTQPPQYA GYPPYNPTPY PPEPSPAPYY SYSQPTQPAP
101: AAEPSPAPLP YDAPYYGGGY QQPAAGYGDD DYLNEGAYAY TGNAGPEPYG ARGTAPTRSG AAMFDDYGRS IGLSSGGAEQ PHGGGGGSVG GSFGKIARAV
201: PKAETHEDAS GGAQKFRVKL LPEGAGSPTD VLCQVGLDGI RMLDPSTNRT LRIYPLDTLT KWEVLDSTVF AIWAKTSVDF EAKRIRLKSN SYTSNTLLDI
301: VTAATVQFKE IGEDARAKGT VDAGKSSIQS NEKKKGFDWM FAKPVDEVKD HWVPDEAAKK CQSCAGDFSH FNRRHHCRNC GEIFCDKCSQ GRIALTAEDN
401: APLVRVCDRC MAEVSQRLSM AQEAANRSTT VQSHGDLARK LKEELERNRK SSGTASGGAS GTRMREVACP TCTVHLQVEV PISGSETVEC GVCQHAFLVS
501: AN

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.