Factsheet for Zm00001d021878_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017373_P001
Zm00001d029743_P001
Zm00001d051242_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	Zm00001d017373_P001	AT4G21670.1	18541146
AT1G20110.1	Zm00001d029743_P001	AT4G21670.1	18541146
AT1G20110.1	Zm00001d051242_P002	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97421	Sorghum	cytosol	81.37	82.58
TraesCS2D01G203300.1	Wheat	cytosol	65.87	71.12
TraesCS2B01G223000.1	Wheat	cytosol	65.13	70.32
HORVU2Hr1G037770.2	Barley	cytosol	64.58	69.72
Os07t0573300-01	Rice	cytosol	65.87	69.05
TraesCS2A01G184400.2	Wheat	cytosol	63.84	68.92
CDY29372	Canola	cytosol	23.06	61.88
Bra025793.1-P	Field mustard	cytosol	22.51	60.7
KRH05975	Soybean	cytosol	36.35	60.24
GSMUA_Achr1P27620_001	Banana	cytosol	14.76	60.15
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	16.79	58.71
GSMUA_Achr1P27690_001	Banana	mitochondrion	21.77	58.71
CDY44204	Canola	cytosol	37.82	52.56
GSMUA_Achr8P33940_001	Banana	cytosol	50.0	52.02
KRH61022	Soybean	nucleus	47.79	49.33
CDY54337	Canola	cytosol	50.0	48.65
CDY62935	Canola	cytosol	49.08	48.1
KRH17455	Soybean	extracellular	14.21	47.83
Bra016476.1-P	Field mustard	cytosol	48.16	47.2
Zm00001d014808_P001	Maize	extracellular	32.84	47.09
KRH51684	Soybean	cytosol	47.6	47.08
VIT_18s0001g14750.t01	Wine grape	cytosol	49.08	45.47
AT1G20110.1	Thale cress	cytosol	49.82	44.93
KRH45071	Soybean	cytosol, nucleus, plastid	6.27	44.74
PGSC0003DMT400025563	Potato	cytosol	45.2	43.52
Solyc04g081750.2.1	Tomato	cytosol	45.02	43.34
GSMUA_Achr1P26420_001	Banana	cytosol	38.19	40.91
CDY43412	Canola	nucleus	32.66	32.3
CDY37424	Canola	extracellular	15.87	30.28
Zm00001d017029_P001	Maize	cytosol	10.52	5.34

Protein Annotations

EntrezGene:100279323	MapMan:22.5.4.3.7	Gene3D:3.30.40.10	EMBL:BT067301	UniProt:C0PG82	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR017455	ProteinID:ONM58946.1
PFAM:PF01363	PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	SMART:SM00064	SUPFAM:SSF50729
SUPFAM:SSF57903	UniParc:UPI000195CA31	EnsemblPlantsGene:Zm00001d021878	EnsemblPlants:Zm00001d021878_P003	EnsemblPlants:Zm00001d021878_T003	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Protein FREE1

Coordinates

chr7:+:165282300..165287779

Molecular Weight (calculated)

57643.5 Da

IEP (calculated)

6.140

GRAVY (calculated)

-0.577

Length

542 amino acids

Sequence
(BLAST)

001: MQHGSGDYAS SAPSGHYYQH QYAAPGSNPY PIATDATAPG AVSGGYAPAP SYSLGGGYPD QPPSAPVYSQ APSAPAYSQA PSAPAYTQPP PQPQHAPGYS
101: PYNTNLNTYP TEAYYTYTPP STQTAAPPPA EANSPALPYD APYYGGGYQP PAAGYDNDDY LNEGAYAYSA GGGSEPYGAR GTAPARSGSA LFDDYGRSIS
201: APSDDYGRSI SAPSGWEEQQ PWGSGGGGGG SGSYGVIAKA LPKAETREDA SGGAQKFRVK LLPEGAGNST DVLCQIGLDG IRMLDPSTSR TLRIYPLDSL
301: TRWEVLDATI FAFWAKTSVD IEPKRIRLKS SSYTSNTMLD TVTAATVQFK EIGADARSRG AIETGKPLVQ SNEKKKGFDW MFTKPVDEVK DHWVPDEVAK
401: KCHSCAVDFS PFNRRHHCRN CGEIFCDKCS QGRIALTAED NAPLVRVCDR CMAEVTQRLS IAKDVANRSA TVQSHEDLAR KLKEEMEKNR KSSASGGGAP
501: GTRMREVACP TCTVHLQVQV PTSGSETVEC GVCQHAFLVS AN

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.