Factsheet for Bra016476.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
plastid 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013546.1-P
Bra020905.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	Bra013546.1-P	AT4G21670.1	18541146
AT1G20110.1	Bra020905.1-P	AT4G21670.1	18541146
AT1G20110.1	Bra038764.1-P	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62935	Canola	cytosol	89.69	89.69
Bra025793.1-P	Field mustard	cytosol	31.46	86.57
GSMUA_Achr1P27620_001	Banana	cytosol	17.9	74.44
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	19.89	70.97
GSMUA_Achr1P27690_001	Banana	mitochondrion	25.14	69.15
AT1G20110.1	Thale cress	cytosol	69.26	63.73
Os06t0724100-01	Rice	cytosol	49.55	56.15
GSMUA_Achr8P33940_001	Banana	cytosol	50.99	54.13
Solyc04g081750.2.1	Tomato	cytosol	54.97	54.0
PGSC0003DMT400025563	Potato	cytosol	54.61	53.64
TraesCS2B01G223000.1	Wheat	cytosol	48.64	53.59
KRH17455	Soybean	extracellular	15.55	53.42
Os07t0573300-01	Rice	cytosol	49.55	53.0
HORVU2Hr1G037770.2	Barley	cytosol	47.74	52.59
TraesCS2A01G184400.2	Wheat	cytosol	47.56	52.39
TraesCS2D01G203300.1	Wheat	cytosol	47.56	52.39
VIT_18s0001g14750.t01	Wine grape	cytosol	54.97	51.97
OQU77119	Sorghum	cytosol	46.84	51.49
TraesCS7D01G528300.1	Wheat	cytosol	46.11	50.1
EER97421	Sorghum	cytosol	48.1	49.81
Zm00001d021878_P003	Maize	cytosol	47.2	48.16
Zm00001d014808_P001	Maize	extracellular	31.65	46.3
GSMUA_Achr1P26420_001	Banana	cytosol	41.95	45.85
Bra031406.1-P	Field mustard	nucleus	8.14	4.93
Bra031405.1-P	Field mustard	cytosol	0.9	4.39

Protein Annotations

MapMan:22.5.4.3.7	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra016476	EnsemblPlants:Bra016476.1	EnsemblPlants:Bra016476.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR017455	UniProt:M4DIZ9
PFAM:PF01363	PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	SMART:SM00064	SUPFAM:SSF57903
UniParc:UPI0002546B72	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT1G20110 (E=2e-184) | zinc finger (FYVE type) family protein

Coordinates

chrA08:-:18645880..18648782

Molecular Weight (calculated)

59599.7 Da

IEP (calculated)

7.278

GRAVY (calculated)

-0.773

Length

553 amino acids

Sequence
(BLAST)

001: MQPGGDYNSY YHHHHQYPPQ FPNPSPNPSP NPTDLAQNTY ASAPPFTGGY GAGDYSQNYQ PPYGVQNTEH VPPPSAPPSF PPPATNPNSY SALNQPPPIH
101: PPAPSSYGSS APPYTSPPPM YYPPFDPPPS SAPAPNPNPL VHAPQQPYSS SYSSTPSYGD YGRSESSASD LYGKRSGSGG GGGGYPAFED SSSYGDGVYP
201: YSGGGKVEPY GSRGTAPKSS NSTLFDDYGR PISVSDSSSS AGSKSAKIAR AVPKADVQED SSGGVQKFRV KLLAETYGQT TTDVLCQIGL DGLRMLDPSS
301: SRTLRIYPLE NITRCEKLDS SILAFWSKTP VDFEAKRIRL QSNSYTTNTL LDTVTAAMFQ AKEIGGSSRP PVSAKLVEQS AEKKKGLGDW MNKIKPVNEE
401: KDHWVPDEAV SKCTSCGSDF GAFNRRHHCR NCGDVFCDKC TQGRIALTAE ENAPQVRVCD RCMAEVSQRL SNAKESASRN MSLQSHEDLA RKLQEEMQRN
501: RKSSSGSREG SGRRMKEVAC PTCTVHLQVQ VPSSGSETIE CGVCQNPFLV SSH

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.