Factsheet for Bra038764.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000480.1-P
Bra007062.1-P
Bra011923.1-P
Bra012034.1-P
Bra012337.1-P
Bra014824.1-P
Bra016476.1-P
Bra017998.1-P
Bra018998.1-P
Bra019588.1-P
Bra019999.1-P
Bra024526.1-P
Bra025793.1-P
Bra030793.1-P
Bra032944.1-P
Bra034322.1-P
Bra034407.1-P
Bra035664.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21670.1	Bra019999.1-P	AT1G09700.1	23141542
AT4G21670.1	Bra030793.1-P	AT1G09700.1	23141542
AT4G21670.1	Bra016476.1-P	AT1G20110.1	18541146
AT4G21670.1	Bra025793.1-P	AT1G20110.1	18541146
AT4G21670.1	Bra012337.1-P	AT1G22640.1	18541146
AT4G21670.1	Bra024526.1-P	AT1G22640.1	18541146
AT4G21670.1	Bra034407.1-P	AT1G35670.1	19130088
AT4G21670.1	Bra018998.1-P	AT1G52890.1	18541146
AT4G21670.1	Bra012034.1-P	AT2G27100.1	23141542
AT4G21670.1	Bra034322.1-P	AT2G27100.1	23141542
AT4G21670.1	Bra000480.1-P	AT2G28840.1	18541146
AT4G21670.1	Bra011923.1-P	AT2G28840.1	18541146
AT4G21670.1	Bra035664.1-P	AT2G28840.1	18541146
AT4G21670.1	Bra032944.1-P	AT3G26730.1	18541146
AT4G21670.1	Bra017998.1-P	AT3G49250.1	18541146
AT4G21670.1	Bra019588.1-P	AT3G49250.1	18541146
AT4G21670.1	Bra007062.1-P	AT3G54290.1	18541146
AT4G21670.1	Bra014824.1-P	AT3G54290.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98696	Canola	nucleus	90.92	92.38
Bra020905.1-P	Field mustard	cytosol	70.22	78.51
AT4G21670.1	Thale cress	nucleus	80.04	78.39
Zm00001d029743_P001	Maize	cytosol	9.08	74.78
Bra013546.1-P	Field mustard	nucleus	63.04	68.0
GSMUA_Achr11P...	Banana	cytosol	2.64	64.1
KRH50009	Soybean	nucleus	58.08	57.53
KRH20483	Soybean	nucleus	57.66	56.88
PGSC0003DMT400057635	Potato	nucleus	52.8	56.75
KRH10835	Soybean	nucleus	56.81	56.16
Solyc02g078550.2.1	Tomato	nucleus	56.39	55.97
KRH21480	Soybean	nucleus	56.07	55.31
VIT_00s0370g00040.t01	Wine grape	cytosol, nucleus	45.72	54.95
Os02t0639000-01	Rice	cytosol	50.69	51.06
GSMUA_Achr11P...	Banana	nucleus	49.95	51.02
EES05486	Sorghum	cytosol	50.16	50.86
HORVU6Hr1G060230.12	Barley	nucleus	49.52	50.32
GSMUA_Achr11P...	Banana	extracellular	9.71	50.27
TraesCS2A01G373400.3	Wheat	nucleus	50.16	50.11
HORVU2Hr1G091030.9	Barley	endoplasmic reticulum, vacuole	47.1	50.06
GSMUA_Achr8P14120_001	Banana	nucleus	50.16	50.05
TraesCS6B01G264000.3	Wheat	nucleus	49.63	49.89
Zm00001d017373_P001	Maize	nucleus	50.58	49.79
TraesCS6A01G235300.4	Wheat	nucleus	49.31	49.63
Os04t0529500-02	Rice	extracellular	48.79	49.52
TraesCS6D01G218000.3	Wheat	nucleus	49.1	49.36
TraesCS2B01G390500.3	Wheat	nucleus	49.21	49.1
TraesCS2D01G369600.4	Wheat	nucleus	48.89	48.84
KXG26770	Sorghum	nucleus	48.36	48.62
Zm00001d051242_P002	Maize	cytosol, nucleus, plastid	47.73	48.24
Bra005692.1-P	Field mustard	nucleus	33.47	40.08

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	EnsemblPlantsGene:Bra038764	EnsemblPlants:Bra038764.1	EnsemblPlants:Bra038764.1-P
InterPro:FCP1_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008420	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0070940	InterPro:HAD-like_sf	InterPro:IPR004274
InterPro:IPR014720	UniProt:M4FCE5	PFAM:PF00035	PFAM:PF03031	PFscan:PS50137	PFscan:PS50969
PANTHER:PTHR23081	PANTHER:PTHR23081:SF17	SMART:SM00358	SMART:SM00577	SUPFAM:SSF54768	SUPFAM:SSF56784
UniParc:UPI0002540CA2	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

AT4G21670 (E=0.0) CPL1, FRY2, ATCPL1 | CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1); double-stranded RNA binding / nucleotide phosphatase

Coordinates

chrA03:+:24195333..24199949

Molecular Weight (calculated)

106154.0 Da

IEP (calculated)

6.102

GRAVY (calculated)

-0.530

Length

947 amino acids

Sequence
(BLAST)

001: MYRVQVYHED GRFGEMEIHP PPREPDDDVL RKKKQREVME QVKIGIRVTR FSHPSERCPP LAVLTTVSSC GLCFKLEAPA SSTAQEPLTL LHSSCLTDNK
101: TAVMSLGEEE LHLVAMYSEN INNDRPCFWA FTVASGIYDS CLVMLNLRCL GIVFDLDETL VVANTTRTFD DKIEALQRRI NNEMDPQRIA VMVAEMKRYQ
201: DDKVLLKQYV ESDQVVENGE VIKVQSEIVP ALSDNHQPLV RPLIRLPEKN IILTRINPMV RDTSVLVRMR PSWEELRSYL TAKGRKRFEV YVCTMAERDY
301: ALEMWRLLDP EGNLINANDL LSRIVCVKAG FKKSLFNVFL DATCHPKMAL VIDDRLKVWD EKDQPRVYVV PAFAPYYSPQ AEAAATPVLC VTRNVACGVR
401: GGFFRDFDDS LLQRIAQISY ENDVEDIPSP PDVSHYLVPE DDSSGVNGNK DPLVFDGMAD AEVERRMKEA ISGSSVVLPA ANIDPRIAAP VQYPMASALS
501: VPAPVPVPQP PQPSAMAFPS TQFQQPTSIA KHLVPSEPSL QSSPAREEGE VPESELGPDT RRRLLILQHG QDTRDAAPSE PPFPQRPPVQ APPPPHVQPR
601: NGWFPVEEEI DPAPLRRTAS KEYPLDSESL NRPRHQSFFP KIENSTQSDR LPHENRRLPK EPLRRDEQLR SNNNTPGSHP FYGEESSWNQ SSSRNSDLDF
701: IPGRSVSATE NPAEVLHQIA VKCGSKVDYK PGLVATTDLR FSVEAWLSGE KIGEGIGKSR REALRKASEV SIQNLADIYL SRANGDPGSS HRDVSPFANG
801: NIIMGNANAL DKQPFARDET AMPVPSRPTD PRLEGSMRHT GSITALRELC ASEGWEMSFQ SQRPLHSDMV HRDELHAQVE IDGRVLGEGV GSTWDEARMQ
901: AAERALYSMR SMPPLHRRQG SPRSFGGMSN KRLKPNFQRM PSSGRYS

Best Arabidopsis Sequence Match ( AT4G21670.1 )
(BLAST)

001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS

Arabidopsis Description

CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.