Factsheet for Bra000480.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
endoplasmic reticulum 1
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013546.1-P
Bra020905.1-P
Bra024839.1-P
Bra024840.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	Bra024839.1-P	AT2G01950.1	19000166
AT2G28840.1	Bra024840.1-P	AT2G01950.1	19000166
AT2G28840.1	Bra013546.1-P	AT4G21670.1	18541146
AT2G28840.1	Bra020905.1-P	AT4G21670.1	18541146
AT2G28840.1	Bra038764.1-P	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83303	Canola	cytosol	89.45	96.92
Bra011923.1-P	Field mustard	nucleus	83.77	90.37
AT2G28840.1	Thale cress	cytosol	82.96	89.69
Bra035664.1-P	Field mustard	nucleus	79.11	86.47
VIT_06s0004g04550.t01	Wine grape	nucleus	57.81	70.54
KRH10274	Soybean	nucleus	63.29	70.27
KRH23057	Soybean	nucleus	63.69	69.62
KRH29806	Soybean	nucleus	60.85	67.11
Solyc11g066020.1.1	Tomato	nucleus	60.65	67.04
KRH24806	Soybean	nucleus	60.24	66.44
PGSC0003DMT400001171	Potato	nucleus	60.04	66.37
PGSC0003DMT400077953	Potato	nucleus	58.42	65.01
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	58.01	65.0
Solyc06g076050.2.1	Tomato	nucleus	58.22	64.21
GSMUA_Achr7P18180_001	Banana	cytosol	56.59	63.27
Os05t0112000-01	Rice	cytosol	55.98	61.33
GSMUA_Achr10P...	Banana	nucleus	54.36	61.19
TraesCS1D01G035300.1	Wheat	cytosol	54.16	59.33
TraesCS1A01G034300.2	Wheat	cytosol	53.14	58.09
EES18892	Sorghum	nucleus	53.96	57.2
TraesCS4B01G207400.1	Wheat	cytosol	51.52	56.82
TraesCS4D01G208300.1	Wheat	cytosol	51.12	55.75
EER92481	Sorghum	nucleus	50.51	55.58
TraesCS4A01G097000.2	Wheat	cytosol	50.91	55.29
Os03t0275300-01	Rice	nucleus	51.93	55.05
GSMUA_Achr6P33430_001	Banana	nucleus	54.97	54.97
TraesCS1B01G050200.3	Wheat	cytosol	53.96	54.73
TraesCS3D01G537900.1	Wheat	cytosol	50.3	54.15
TraesCS3A01G532700.1	Wheat	cytosol	50.3	53.68
TraesCS3B01G609500.1	Wheat	cytosol	50.3	53.45
Os01t0974400-01	Rice	cytosol	48.28	53.36
EES02150	Sorghum	cytosol	50.1	51.03
Zm00001d025843_P001	Maize	plastid	20.49	49.03
TraesCS7D01G304700.1	Wheat	cytosol	20.28	49.02
HORVU1Hr1G043970.3	Barley	plastid	21.3	37.1
Bra009278.1-P	Field mustard	cytosol	25.76	24.66
Bra020414.1-P	Field mustard	plastid	23.12	22.57
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	22.72	21.75
Bra020415.1-P	Field mustard	mitochondrion	6.69	15.57

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:Bra000480	EnsemblPlants:Bra000480.1	EnsemblPlants:Bra000480.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
UniProt:M4C8F2	PFAM:PF00023	PFAM:PF12796	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000253FFA7
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT2G28840 (E=3e-182) | ankyrin repeat family protein

Coordinates

chrA03:-:11313425..11315519

Molecular Weight (calculated)

53962.0 Da

IEP (calculated)

7.915

GRAVY (calculated)

-0.152

Length

493 amino acids

Sequence
(BLAST)

001: MGNFPLLLLL HCNPKTPQPP WRFILTPEQS ASPVADGVVI PSILHIISLE MGQSMSCGTR PEHGIFASVQ CGDIVTVRRV MTSDPSLLHQ TTPYDRHSIL
101: TLLLERFKNP DVLNRHKQTP LMLAAMYGRI SCVKKLAEVG ANVLMFDSVN RRTCLHYSAY YGHADCVQAI LSAAQSSPVA VHWGYARFVN IRDDKGATPL
201: HLAARQRRPE CVNVLLDSGS LVCANTSLYG SPGSTPLHLA ARSGSIDCVR KLLAWGADRL QRDASGRIPY VVAMKHKHGA CGALLNPSSA EPLVWPSPLK
301: FISELNDEAK LLLEQALMDA NREREETILK GTAYSLPSPS FSDTASDDNM SEMSDSELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT
401: PPVCPFCRSV IVRLVVAQNN NNNDKSKSQY EVVDREAGDV NSSKLRKHRR SINLGEESSS FMGLSSIGSF GRITGRSSGR IAADNELMNK PIL

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.