CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10835
KRH20483
KRH21480
KRH42483
KRH50009
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	KRH42483	AT2G01950.1	19000166
AT2G28840.1	KRH58580	AT2G01950.1	19000166
AT2G28840.1	KRH10835	AT4G21670.1	18541146
AT2G28840.1	KRH20483	AT4G21670.1	18541146
AT2G28840.1	KRH21480	AT4G21670.1	18541146
AT2G28840.1	KRH50009	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29806	Soybean	nucleus	97.09	97.09
KRH23057	Soybean	nucleus	81.66	80.93
KRH10274	Soybean	nucleus	80.31	80.86
VIT_06s0004g04550.t01	Wine grape	nucleus	70.25	77.72
PGSC0003DMT400001171	Potato	nucleus	72.04	72.2
Solyc11g066020.1.1	Tomato	nucleus	71.36	71.52
PGSC0003DMT400077953	Potato	nucleus	70.25	70.88
Solyc06g076050.2.1	Tomato	nucleus	70.02	70.02
AT2G28840.1	Thale cress	cytosol	70.02	68.64
CDY15789	Canola	cytosol	69.13	67.76
CDY47891	Canola	cytosol	68.9	67.69
Bra011923.1-P	Field mustard	nucleus	68.9	67.4
CDX83303	Canola	cytosol	68.23	67.03
GSMUA_Achr10P...	Banana	nucleus	65.32	66.67
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	65.1	66.14
Bra035664.1-P	Field mustard	nucleus	66.22	65.63
GSMUA_Achr7P18180_001	Banana	cytosol	64.21	65.08
CDX77214	Canola	cytosol	65.77	64.9
Os05t0112000-01	Rice	cytosol	64.88	64.44
KRG99867	Soybean	nucleus	63.53	64.4
CDX95759	Canola	cytosol	67.11	64.38
KRH46816	Soybean	cytosol	62.86	64.16
TraesCS1D01G035300.1	Wheat	cytosol	62.64	62.22
CDY31737	Canola	cytosol	66.0	61.84
TraesCS1A01G034300.2	Wheat	cytosol	61.97	61.42
EES18892	Sorghum	nucleus	63.31	60.86
TraesCS4B01G207400.1	Wheat	cytosol	60.63	60.63
Bra000480.1-P	Field mustard	plastid	66.44	60.24
TraesCS4D01G208300.1	Wheat	cytosol	60.18	59.51
EER92481	Sorghum	nucleus	59.51	59.38
TraesCS4A01G097000.2	Wheat	cytosol	59.73	58.81
TraesCS1B01G050200.3	Wheat	cytosol	62.86	57.82
Os03t0275300-01	Rice	nucleus	59.96	57.63
GSMUA_Achr6P33430_001	Banana	nucleus	62.86	57.0
Os01t0974400-01	Rice	cytosol	56.15	56.28
TraesCS3D01G537900.1	Wheat	cytosol	57.05	55.68
TraesCS3B01G609500.1	Wheat	cytosol	57.49	55.39
TraesCS3A01G532700.1	Wheat	cytosol	57.05	55.19
EES02150	Sorghum	cytosol	59.51	54.96
KRH46162	Soybean	cytosol	38.26	49.42
Zm00001d025843_P001	Maize	plastid	22.37	48.54
TraesCS7D01G304700.1	Wheat	cytosol	20.58	45.1
HORVU1Hr1G043970.3	Barley	plastid	24.16	38.16
KRH09105	Soybean	nucleus	29.08	25.44
KRG91461	Soybean	cytosol, nucleus, plastid	28.86	25.2
KRH38558	Soybean	nucleus	28.64	25.05
KRH18952	Soybean	cytosol, nucleus, plastid	28.19	24.8
KRH35355	Soybean	nucleus	28.19	24.61
KRH02947	Soybean	cytosol, nucleus, plastid	27.52	24.12

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100815043	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EMBL:ACUP02007186	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_12G063600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
UniProt:I1LQR0	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
ProteinID:KRH24804.1	ProteinID:KRH24805.1	EnsemblPlants:KRH24806	ProteinID:KRH24806	ProteinID:KRH24806.1	PFAM:PF12796
PFAM:PF13857	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000233D2EE	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD

Description

hypothetical protein

Coordinates

chr12:-:4659292..4662998

Molecular Weight (calculated)

48440.8 Da

IEP (calculated)

7.591

GRAVY (calculated)

-0.221

Length

447 amino acids

Sequence
(BLAST)

001: MGQGLSCRGS HEHGLFRAVQ HGDLDTVAAL LQTHPSLLNH TTVYDHHSPL HIAAANGQIQ VLSWLLDGSV NPDVLNRQKQ TPLMLAAMHG KIACVEKLLE
101: AGANVLMFDA CYGRTCLHYA AYYGHSSCLK AILSAAQSSP VAASWGFARF VNIRDGRRAT PLHLAARQRR PECVHILLYS GALVSASTGR YGCPGSTPLH
201: LAAKGGSLDC IRELLAWGAD RLQRDASGRI PYVVALKHRH GACATLLNLS SAESLVWPSS LKIISELNPN AKELLERALM DANREREKNI LKGSDYSLPS
301: PSHSDGVDDN ISEVSETELC CICFEQVCTI EVQDCGHQMC AQCTLALCCH NKPNPSTSRV IPPVCPFCRS SIARLVVVKN ESPDDINQDG VDITCSKPSK
401: SRKLRNLNED GSSSIKGLSN VNSFGKMGGR SSGKIAAENE WEDDKQQ

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.