Factsheet for TraesCS1D01G035300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G373400.3
TraesCS2B01G390500.3
TraesCS2D01G369600.4
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1
TraesCS6A01G235300.4
TraesCS6B01G264000.3
TraesCS6D01G218000.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS2A01G373400.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS2B01G390500.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS2D01G369600.4	AT4G21670.1	18541146
AT2G28840.1	TraesCS6A01G235300.4	AT4G21670.1	18541146
AT2G28840.1	TraesCS6B01G264000.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS6D01G218000.3	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G034300.2	Wheat	cytosol	97.33	97.12
TraesCS1B01G050200.3	Wheat	cytosol	98.22	90.95
Os05t0112000-01	Rice	cytosol	87.56	87.56
EES18892	Sorghum	nucleus	85.56	82.8
Zm00001d035657_P001	Maize	cytosol	59.78	79.12
Zm00001d011060_P001	Maize	cytosol	75.33	76.01
HORVU1Hr1G005260.1	Barley	plastid	84.67	75.9
TraesCS3D01G537900.1	Wheat	cytosol	70.44	69.21
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	66.89	68.41
GSMUA_Achr7P18180_001	Banana	cytosol	66.89	68.25
VIT_06s0004g04550.t01	Wine grape	nucleus	61.11	68.07
GSMUA_Achr10P...	Banana	nucleus	66.22	68.04
PGSC0003DMT400001171	Potato	nucleus	64.89	65.47
TraesCS4D01G208300.1	Wheat	cytosol	65.33	65.04
Solyc11g066020.1.1	Tomato	nucleus	64.44	65.02
KRH29806	Soybean	nucleus	62.89	63.31
KRH10274	Soybean	nucleus	62.22	63.06
PGSC0003DMT400077953	Potato	nucleus	62.0	62.98
KRH23057	Soybean	nucleus	62.89	62.75
Solyc06g076050.2.1	Tomato	nucleus	62.22	62.64
KRH24806	Soybean	nucleus	62.22	62.64
CDY47891	Canola	cytosol	63.11	62.42
AT2G28840.1	Thale cress	cytosol	63.11	62.28
CDY15789	Canola	cytosol	63.11	62.28
Bra011923.1-P	Field mustard	nucleus	63.11	62.14
VIT_08s0007g00200.t01	Wine grape	nucleus	60.67	61.49
Bra035664.1-P	Field mustard	nucleus	61.56	61.42
KRH46816	Soybean	cytosol	59.78	61.42
KRG99867	Soybean	nucleus	59.78	61.0
CDX77214	Canola	cytosol	60.89	60.49
CDX83303	Canola	cytosol	60.89	60.22
CDX95759	Canola	cytosol	60.89	58.8
TraesCS7D01G304700.1	Wheat	cytosol	26.44	58.33
Solyc09g010690.2.1	Tomato	nucleus	58.0	57.87
GSMUA_Achr6P33430_001	Banana	nucleus	63.33	57.81
CDY31737	Canola	cytosol	60.89	57.44
Bra000480.1-P	Field mustard	plastid	59.33	54.16
PGSC0003DMT400023028	Potato	nucleus	57.78	50.1
KRH46162	Soybean	cytosol	38.22	49.71
TraesCS7D01G055500.1	Wheat	cytosol	27.33	27.95
TraesCS7D01G147400.1	Wheat	cytosol	27.33	25.57
TraesCS1D01G187300.1	Wheat	cytosol	28.89	25.0
TraesCS6D01G335000.2	Wheat	cytosol	27.11	24.4

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607
GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042742	GO:GO:0051865	InterPro:IPR001841
InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PFAM:PF13606
PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1D01G035300	EnsemblPlants:TraesCS1D01G035300.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
TIGR:cd00204	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:16379080..16381260

Molecular Weight (calculated)

48286.5 Da

IEP (calculated)

6.925

GRAVY (calculated)

-0.184

Length

450 amino acids

Sequence
(BLAST)

001: MGHGVSCART GDEHDFFRAA QLGDLDALGA LLAADASLAR RATLYDRLSP LHIAAANGRL EALAMFLDRG AQPDAVDRHK QTPLMLAAMH GKIGCVLKLL
101: QAGANILMFD SVHARTCLHH AAYYGHVDCL DAILSTARTT PVAGSWGFAR FVNVRDDHGA TPLHLAARQG RPGCVQVLLE NGAIVSALTG SYGFPGSTSL
201: HLAARSGDLD CIRKLLAWGA DRLQRDSAGR IPYVVAHKRN HGACAALLNP SSAEPMVWPS PLKFISELDP EAKALLEAAL MEANREREKK ILKDAKCSPQ
301: SPLQYDDDHI DDDMFSEVSD TELCCICFDQ ACTIEVQDCG HQMCAPCTLA LCCHNKPNPA TLTLPSPACP FCRGSISRLV VAQTQTADNG DPDRPASPQL
401: AHRRSRRSHN LSEGSSSFKG LSSAISKIAR GSSRMAESDG AAMDKPEHDL

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.