Factsheet for TraesCS7D01G055500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G060700.1	Wheat	cytosol	97.5	97.28
TraesCS4A01G429100.1	Wheat	cytosol	95.91	96.13
Os06t0128600-01	Rice	cytosol, mitochondrion	11.36	76.92
Os06t0128700-01	Rice	cytosol	21.36	75.2
KXG19180	Sorghum	cytosol	65.45	70.94
Zm00001d036014_P001	Maize	cytosol	62.27	66.99
Zm00001d045499_P001	Maize	cytosol	64.32	66.59
HORVU7Hr1G011250.3	Barley	mitochondrion, nucleus	47.95	48.96
GSMUA_Achr1P07900_001	Banana	cytosol, nucleus, plastid	45.0	43.33
TraesCS1D01G187300.1	Wheat	cytosol	50.91	43.08
TraesCS7D01G147400.1	Wheat	cytosol	40.0	36.59
TraesCS6D01G335000.2	Wheat	cytosol	40.68	35.8
TraesCS4D01G208300.1	Wheat	cytosol	28.86	28.1
TraesCS1D01G035300.1	Wheat	cytosol	27.95	27.33
TraesCS3D01G537900.1	Wheat	cytosol	28.41	27.29
TraesCS7D01G304700.1	Wheat	cytosol	7.95	17.16

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PFAM:PF13857	ScanProsite:PS00518	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF18	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7D01G055500	EnsemblPlants:TraesCS7D01G055500.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
TIGR:cd00204	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:29792202..29797549

Molecular Weight (calculated)

45088.7 Da

IEP (calculated)

6.598

GRAVY (calculated)

0.057

Length

440 amino acids

Sequence
(BLAST)

001: MGNALGCAGL GERLAAAARD GDAAEVRRLL AADPGLARCT ATFGNLSSPL HLAATKGHHE IAALLLEKGA DPNARNVYGQ TPLMQACRSG HWEVVQTLLA
101: FRCNVWKADG LTGRTALHAA AAGGHVRCAR LLLADAAGAG EGASARYANR AAGGGVTALH LAALHGHVDC VHLLVDERAS LDAQTIPCAA APMAAIGAGS
201: TPLHYAASGG EVRCCQVLVS RGADRMAANC NGWLAVDVAR MWKCNWLEHV LAPKSQLPVP KFPPSAYLSL PLPSLLAVAR DYAAAGFPAS PDSGAGNDDD
301: ACSVCLERPC NVAAEVCGHE LCLKCAMDLC TVMKAYEVPG LAGTVPCPLC RSGIASFRKA VAAATASPED DQQSMSGSSL PCACARCQDR HGSPEDEEEE
401: KSTCRSSGGR SYGGGGLDGP EAAIAPLYCA PFTGPSAILS

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.