CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036014_P001	Maize	cytosol	83.99	83.37
Zm00001d045499_P001	Maize	cytosol	85.96	82.12
Os06t0128600-01	Rice	cytosol, mitochondrion	12.32	76.92
Os06t0128700-01	Rice	cytosol	23.65	76.8
TraesCS4A01G429100.1	Wheat	cytosol	71.43	66.06
TraesCS7D01G055500.1	Wheat	cytosol	70.94	65.45
TraesCS7A01G060700.1	Wheat	cytosol	70.94	65.31
GSMUA_Achr1P07900_001	Banana	cytosol, nucleus, plastid	51.97	46.17
EER92045	Sorghum	cytosol, nucleus, plastid	53.94	42.12
OQU80200	Sorghum	nucleus	45.57	38.3
EES05937	Sorghum	nucleus	46.8	38.23
HORVU7Hr1G011250.3	Barley	mitochondrion, nucleus	38.42	36.19
EER92481	Sorghum	nucleus	30.3	27.46
EES18892	Sorghum	nucleus	28.82	25.16
EES02150	Sorghum	cytosol	29.56	24.79

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	UniProt:A0A194YHU9	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KXG19180	ProteinID:KXG19180	ProteinID:KXG19180.1
ProteinID:KXG19181.1	PFAM:PF12796	PFAM:PF13857	PRINTS:PR01415	ScanProsite:PS00518	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF18	SMART:SM00248	EnsemblPlantsGene:SORBI_3010G018100
SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0001C8059B	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:1514183..1518400

Molecular Weight (calculated)

42105.5 Da

IEP (calculated)

7.025

GRAVY (calculated)

0.103

Length

406 amino acids

Sequence
(BLAST)

001: MGNALGCTGL GERLAAAARD GDAAEVRRLL EANPGLARCA AFGSLNSPLH LAAAKGHHEI AALLLENGAD VNARNIYGQT ALMQACRFGH WEVVQTLLVF
101: RCNVSKVDSL SSRTALHLAA AGGHVKCARL LLAGAGGNKL VNRAASGGVT ALHLAALHGH ADCVHLLIDE RADVAAPTLP CAASPMASIG AGSTPLHYAA
201: AGGEVKCCQI LVSRGADRTA VNCNGWLPVD VARTWGCHWL EHVLSPKSHL PIPKFPPSAY LSSPLASLLT IARDCGLVLN TTPPEVLDDD GGDACAVCLE
301: RPCTVAAEVC GHELCVKCAL DLCSVIKSYD VPGIAGTIPC PLCRSGIASF RRRAADEDEP DVNAGGGRRR GAGGDHQASS SPEKKRSTDS DQEILPLFFT
401: PPAVLS

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.