CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05486
KXG26770
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	OQU92006	AT2G01950.1	19000166
AT2G28840.1	EES05486	AT4G21670.1	18541146
AT2G28840.1	KXG26770	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035657_P001	Maize	cytosol	66.67	91.18
Os05t0112000-01	Rice	cytosol	85.16	88.0
TraesCS1D01G035300.1	Wheat	cytosol	82.8	85.56
TraesCS1A01G034300.2	Wheat	cytosol	81.51	84.04
Zm00001d011060_P001	Maize	cytosol	79.35	82.74
TraesCS1B01G050200.3	Wheat	cytosol	83.01	79.42
GSMUA_Achr7P18180_001	Banana	cytosol	66.45	70.07
VIT_06s0004g04550.t01	Wine grape	nucleus	60.65	69.8
GSMUA_Achr10P...	Banana	nucleus	64.95	68.95
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	65.16	68.86
HORVU1Hr1G005260.1	Barley	plastid	72.69	67.33
PGSC0003DMT400001171	Potato	nucleus	63.87	66.59
Solyc11g066020.1.1	Tomato	nucleus	63.44	66.14
PGSC0003DMT400077953	Potato	nucleus	62.37	65.46
EER92481	Sorghum	nucleus	63.01	65.4
Solyc06g076050.2.1	Tomato	nucleus	62.8	65.32
EES02150	Sorghum	cytosol	66.67	64.05
KRH29806	Soybean	nucleus	61.51	63.98
KRH24806	Soybean	nucleus	60.86	63.31
KRH46816	Soybean	cytosol	59.57	63.24
VIT_08s0007g00200.t01	Wine grape	nucleus	60.0	62.84
KRH10274	Soybean	nucleus	60.0	62.84
KRH23057	Soybean	nucleus	60.86	62.75
KRG99867	Soybean	nucleus	59.35	62.59
CDY47891	Canola	cytosol	60.43	61.76
AT2G28840.1	Thale cress	cytosol	60.43	61.62
CDY15789	Canola	cytosol	60.43	61.62
Bra011923.1-P	Field mustard	nucleus	60.43	61.49
Bra035664.1-P	Field mustard	nucleus	58.92	60.75
CDX77214	Canola	cytosol	58.49	60.04
CDX83303	Canola	cytosol	58.71	60.0
GSMUA_Achr6P33430_001	Banana	nucleus	62.58	59.03
Solyc09g010690.2.1	Tomato	nucleus	56.77	58.54
CDX95759	Canola	cytosol	58.49	58.37
CDY31737	Canola	cytosol	58.71	57.23
Bra000480.1-P	Field mustard	plastid	57.2	53.96
KRH46162	Soybean	cytosol	38.06	51.16
PGSC0003DMT400023028	Potato	nucleus	56.34	50.48
KXG19180	Sorghum	cytosol	25.16	28.82
EES05937	Sorghum	nucleus	27.74	25.96
OQU80200	Sorghum	nucleus	26.88	25.88
EER92045	Sorghum	cytosol, nucleus, plastid	26.88	24.04

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EntrezGene:8068682	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	UniProt:C5YYJ6	ncoils:Coil	EnsemblPlants:EES18892	ProteinID:EES18892	ProteinID:EES18892.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987
GO:GO:0016740	GO:GO:0019538	GO:GO:0042742	GO:GO:0051865	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PFAM:PF13606	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	EnsemblPlantsGene:SORBI_3009G013900
SUPFAM:SSF48403	SUPFAM:SSF57850	unigene:Sbi.14185	UniParc:UPI0001A88A11	RefSeq:XP_002440462.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:1209517..1212008

Molecular Weight (calculated)

49426.8 Da

IEP (calculated)

7.086

GRAVY (calculated)

-0.145

Length

465 amino acids

Sequence
(BLAST)

001: MGHGVSCART GDEHDYFRAA QVGDLDALGA LLAADPSLAR RATLYDRLSA LHIAAANGRL EVLSMVLDHG VPPDAVNRHK QTPLMLAAMH GKIDCVLKLL
101: QAGANILMFD SLHGRSCLHH ASYFGNVDCL QAILTAARTT PVADSWGFAR FVNVRDDHGA TPLHLAARQG RPGCVQVLLE NGAIVSALTG SYGFPGSTSL
201: HLAARSGNLD CIRKLLAWGA DRLQRDSAGR IPYAVALKRN HEACAALLNP SSAEPMVWPS PLKFISELDP EAKALLEAAL MEANREREKK ILKGTKYSPP
301: SSPPSTCEHE IDADAIDDVS SETSDTELCC ICFDQACTIE VQDCGHQMCA PCTLALCCHS KPNPTTLTLP SPACPFCRGN ISRLLVARAS TASLDADTDK
401: AAAAAASSPQ LVRRRSRRSH NLSDGGSSSF KGLSSAVAGS FSKIGRGSSR MADSDNGMDK PEHDL

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.