Factsheet for Bra011923.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013546.1-P
Bra020905.1-P
Bra024839.1-P
Bra024840.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	Bra024839.1-P	AT2G01950.1	19000166
AT2G28840.1	Bra024840.1-P	AT2G01950.1	19000166
AT2G28840.1	Bra013546.1-P	AT4G21670.1	18541146
AT2G28840.1	Bra020905.1-P	AT4G21670.1	18541146
AT2G28840.1	Bra038764.1-P	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47891	Canola	cytosol	98.69	99.12
CDY15789	Canola	cytosol	98.25	98.46
AT2G28840.1	Thale cress	cytosol	91.25	91.45
Bra035664.1-P	Field mustard	nucleus	87.75	88.91
Bra000480.1-P	Field mustard	plastid	90.37	83.77
VIT_06s0004g04550.t01	Wine grape	nucleus	64.77	73.27
KRH10274	Soybean	nucleus	69.8	71.85
KRH23057	Soybean	nucleus	70.24	71.18
KRH29806	Soybean	nucleus	68.05	69.57
KRH24806	Soybean	nucleus	67.4	68.9
Solyc11g066020.1.1	Tomato	nucleus	66.52	68.16
PGSC0003DMT400001171	Potato	nucleus	66.08	67.71
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	64.55	67.05
PGSC0003DMT400077953	Potato	nucleus	64.99	67.04
Solyc06g076050.2.1	Tomato	nucleus	64.55	66.0
GSMUA_Achr7P18180_001	Banana	cytosol	63.24	65.53
Os05t0112000-01	Rice	cytosol	64.11	65.11
GSMUA_Achr10P...	Banana	nucleus	61.27	63.93
TraesCS1D01G035300.1	Wheat	cytosol	62.14	63.11
TraesCS1A01G034300.2	Wheat	cytosol	61.27	62.08
EES18892	Sorghum	nucleus	61.49	60.43
TraesCS4B01G207400.1	Wheat	cytosol	57.33	58.61
TraesCS1B01G050200.3	Wheat	cytosol	62.14	58.44
EER92481	Sorghum	nucleus	56.67	57.81
TraesCS4D01G208300.1	Wheat	cytosol	57.11	57.74
Os03t0275300-01	Rice	nucleus	58.64	57.63
TraesCS4A01G097000.2	Wheat	cytosol	57.11	57.49
TraesCS3D01G537900.1	Wheat	cytosol	56.67	56.55
TraesCS3A01G532700.1	Wheat	cytosol	57.11	56.49
TraesCS3B01G609500.1	Wheat	cytosol	57.11	56.25
GSMUA_Achr6P33430_001	Banana	nucleus	60.61	56.19
Os01t0974400-01	Rice	cytosol	54.49	55.83
EES02150	Sorghum	cytosol	56.02	52.89
TraesCS7D01G304700.1	Wheat	cytosol	22.76	50.98
Zm00001d025843_P001	Maize	plastid	22.32	49.51
HORVU1Hr1G043970.3	Barley	plastid	23.85	38.52
Bra009278.1-P	Field mustard	cytosol	28.88	25.63
Bra020414.1-P	Field mustard	plastid	26.7	24.16
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	26.7	23.69
Bra020415.1-P	Field mustard	mitochondrion	7.44	16.04

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:Bra011923	EnsemblPlants:Bra011923.1	EnsemblPlants:Bra011923.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
UniProt:M4D615	PFAM:PF12796	PFAM:PF13857	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI00025412ED
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT2G28840 (E=2e-211) | ankyrin repeat family protein

Coordinates

chrA07:+:11300452..11302419

Molecular Weight (calculated)

49629.5 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.195

Length

457 amino acids

Sequence
(BLAST)

001: MGQSMSCGVR PEHHGIFASV QCGDIVTVRR AMMTDPSLLN QATPYDRHSV LHVAAASGQI EILSLLLERF TNPDTLNRHK QTPLMLAAMY GRISCVKKLA
101: QVGANVLMFD SVNRRTCLHY AAYYGHADCV QAILSAAQSS PVAVHWGFAR FVNIRDDKGA TPLHLAARQR RPECVNVLLD SGSLVCASTS LYGSPGSTPL
201: HLAARSGSID CVRKLLAWGA DRLQRDASGR IPYVVAMKHK HGACGALLNP SSAEPLVWPS PLKFISELNE EAKLLLEQAL MDANREREKT ILKGTAFSLP
301: SPSYSDNASD DNMSEMSDSE MCCICFEQAC TIEVKDCGHQ MCAQCTLALC CHNKPNPTTS TVTPPVCPFC RSVISRLVIA QNNNNNNDNS KSQDEVVDRE
401: AGDVSSSKLR KHRKSMNLGE ESSSFMGLSS IGSFGKITGR GSGRIAADNE LMDKPIL

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.