Factsheet for TraesCS4D01G208300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G373400.3
TraesCS2B01G390500.3
TraesCS2D01G369600.4
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1
TraesCS6A01G235300.4
TraesCS6B01G264000.3
TraesCS6D01G218000.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS2A01G373400.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS2B01G390500.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS2D01G369600.4	AT4G21670.1	18541146
AT2G28840.1	TraesCS6A01G235300.4	AT4G21670.1	18541146
AT2G28840.1	TraesCS6B01G264000.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS6D01G218000.3	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G207400.1	Wheat	cytosol	97.57	98.66
TraesCS4A01G097000.2	Wheat	cytosol	98.45	98.02
HORVU4Hr1G059710.8	Barley	cytosol	96.46	91.79
EER92481	Sorghum	nucleus	86.73	87.5
Zm00001d028616_P001	Maize	cytosol	86.06	87.22
Zm00001d047806_P001	Maize	cytosol	85.84	87.0
Os03t0275300-01	Rice	nucleus	87.83	85.38
Zm00001d028254_P001	Maize	plastid	56.19	66.15
TraesCS1D01G035300.1	Wheat	cytosol	65.04	65.33
VIT_06s0004g04550.t01	Wine grape	nucleus	57.96	64.85
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	62.61	64.32
GSMUA_Achr7P18180_001	Banana	cytosol	61.5	63.04
GSMUA_Achr10P...	Banana	nucleus	60.84	62.79
TraesCS3D01G537900.1	Wheat	cytosol	61.73	60.92
KRH29806	Soybean	nucleus	60.18	60.85
VIT_08s0007g00200.t01	Wine grape	nucleus	59.29	60.36
PGSC0003DMT400001171	Potato	nucleus	59.51	60.31
KRH24806	Soybean	nucleus	59.51	60.18
KRH10274	Soybean	nucleus	59.07	60.14
Solyc11g066020.1.1	Tomato	nucleus	59.07	59.87
Solyc06g076050.2.1	Tomato	nucleus	59.07	59.73
KRH23057	Soybean	nucleus	59.51	59.65
PGSC0003DMT400077953	Potato	nucleus	58.41	59.59
KRH46816	Soybean	cytosol	57.52	59.36
KRG99867	Soybean	nucleus	57.74	59.18
Bra035664.1-P	Field mustard	nucleus	57.52	57.65
AT2G28840.1	Thale cress	cytosol	57.96	57.46
CDY47891	Canola	cytosol	57.74	57.36
CDY15789	Canola	cytosol	57.74	57.24
Solyc09g010690.2.1	Tomato	nucleus	57.08	57.21
Bra011923.1-P	Field mustard	nucleus	57.74	57.11
CDX83303	Canola	cytosol	57.08	56.7
CDX77214	Canola	cytosol	56.64	56.51
CDX95759	Canola	cytosol	56.42	54.72
GSMUA_Achr6P33430_001	Banana	nucleus	59.51	54.56
CDY31737	Canola	cytosol	57.3	54.3
Bra000480.1-P	Field mustard	plastid	55.75	51.12
TraesCS7D01G304700.1	Wheat	cytosol	22.57	50.0
PGSC0003DMT400023028	Potato	nucleus	56.86	49.52
KRH46162	Soybean	cytosol	37.83	49.42
TraesCS7D01G055500.1	Wheat	cytosol	28.1	28.86
TraesCS1D01G187300.1	Wheat	cytosol	30.53	26.54
TraesCS7D01G147400.1	Wheat	cytosol	27.65	25.99
TraesCS6D01G335000.2	Wheat	cytosol	28.32	25.6

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF13637	PRINTS:PR01415	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF19	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS4D01G208300	EnsemblPlants:TraesCS4D01G208300.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	TIGR:cd00204	SEG:seg

Description

No Description!

Coordinates

chr4D:+:358715178..358717786

Molecular Weight (calculated)

48210.3 Da

IEP (calculated)

7.619

GRAVY (calculated)

-0.224

Length

452 amino acids

Sequence
(BLAST)

001: MGHGASCGRP SEEVDFFGAA QSGDLARLAA AVSSRPSLLR RTTLFDRLSA LHIAAAHGHL QVVSMALDLC VEPDVVNRHK QTALMLAAMH GRTECVRRLL
101: DAGANILMFD SSHGRTCLHY AAYYGHSDCL RAILTAARTA PVSQSWGYAR FVNVRDDTGA TPLHLAARQG WRRCVHVLLE NGAIVSASSG AFGFPGSTPL
201: HLAARGGSLD CVRQLLSWGA DRLQRDSVGR IPYEVAVKRG HVACAALLNP SSAEPLVWPS PLKFISELEP DAKALLEAAL MEANREREKR ILKGAKNSLP
301: SPSHSDDGAT VSEGAEVCSI CFDQACAIEV RECGHQMCAA CTLALCCHAK PNPATQSQPL PTCPFCRGGI TRLAVATRAK AGDDDDEDEE EGEGRLESPR
401: HRRSRRSLNL SGGGDGGSSS SSLMGSIASS IGKMGRRKTD SSELQVQVDD KP

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.