CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX94046
CDX98696
CDY03088
CDY17621
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	CDY03088	AT2G01950.1	19000166
AT2G28840.1	CDY17621	AT2G01950.1	19000166
AT2G28840.1	CDX76438	AT4G21670.1	18541146
AT2G28840.1	CDX79083	AT4G21670.1	18541146
AT2G28840.1	CDX94046	AT4G21670.1	18541146
AT2G28840.1	CDX98696	AT4G21670.1	18541146
AT2G28840.1	CDY31421	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035664.1-P	Field mustard	nucleus	95.36	95.79
CDY31737	Canola	cytosol	96.69	91.82
CDY47891	Canola	cytosol	86.75	86.37
CDX83303	Canola	cytosol	86.53	86.15
CDY15789	Canola	cytosol	86.53	85.96
AT2G28840.1	Thale cress	cytosol	84.33	83.77
CDX95759	Canola	cytosol	85.65	83.26
VIT_06s0004g04550.t01	Wine grape	nucleus	63.36	71.04
KRH10274	Soybean	nucleus	67.33	68.69
KRH23057	Soybean	nucleus	67.77	68.07
KRH29806	Soybean	nucleus	65.56	66.44
Solyc11g066020.1.1	Tomato	nucleus	65.12	66.14
PGSC0003DMT400001171	Potato	nucleus	64.9	65.92
KRH24806	Soybean	nucleus	64.9	65.77
PGSC0003DMT400077953	Potato	nucleus	64.02	65.46
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	63.58	65.45
GSMUA_Achr7P18180_001	Banana	cytosol	63.58	65.31
Solyc06g076050.2.1	Tomato	nucleus	64.02	64.88
Os05t0112000-01	Rice	cytosol	63.13	63.56
GSMUA_Achr10P...	Banana	nucleus	59.6	61.64
TraesCS1D01G035300.1	Wheat	cytosol	60.49	60.89
TraesCS1A01G034300.2	Wheat	cytosol	59.82	60.09
EES18892	Sorghum	nucleus	60.04	58.49
TraesCS4B01G207400.1	Wheat	cytosol	56.73	57.49
TraesCS4D01G208300.1	Wheat	cytosol	56.51	56.64
TraesCS4A01G097000.2	Wheat	cytosol	56.51	56.39
TraesCS1B01G050200.3	Wheat	cytosol	60.49	56.38
EER92481	Sorghum	nucleus	55.19	55.8
TraesCS3D01G537900.1	Wheat	cytosol	56.07	55.46
GSMUA_Achr6P33430_001	Banana	nucleus	60.26	55.38
TraesCS3A01G532700.1	Wheat	cytosol	56.07	54.98
TraesCS3B01G609500.1	Wheat	cytosol	56.29	54.96
Os03t0275300-01	Rice	nucleus	56.07	54.62
Os01t0974400-01	Rice	cytosol	53.42	54.26
EES02150	Sorghum	cytosol	54.53	51.03
Zm00001d025843_P001	Maize	plastid	21.41	47.09
TraesCS7D01G304700.1	Wheat	cytosol	21.19	47.06
HORVU1Hr1G043970.3	Barley	plastid	24.5	39.22
CDY27425	Canola	cytosol	5.74	30.95
CDX98991	Canola	cytosol	28.26	24.9
CDX70022	Canola	cytosol	28.26	24.85
CDY66355	Canola	cytosol	28.04	24.76
CDY51284	Canola	cytosol	26.49	23.81
CDY02760	Canola	cytosol	26.27	23.52
CDY25888	Canola	extracellular, vacuole	22.96	22.56
CDY65199	Canola	cytosol, mitochondrion, nucleus	7.95	16.74

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078CME8	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX77214	ProteinID:CDX77214	ProteinID:CDX77214.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00127878001	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683
InterPro:IPR036770	PFAM:PF00023	PFAM:PF12796	PFAM:PF13637	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850
UniParc:UPI0004EDCDFF	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaC04g40090D

Coordinates

chrLK031809:+:2180070..2182467

Molecular Weight (calculated)

48975.6 Da

IEP (calculated)

7.580

GRAVY (calculated)

-0.185

Length

453 amino acids

Sequence
(BLAST)

001: MGQSMSCGAR PEHEIFASVQ RGDIVTVRRA ITADPSVVRQ TTAYDRHSLL HVAAASGHIE ILSLLLERSL NPDMLNRHNQ TPLMLAAMHG RISCIKKLAQ
101: VGANVLMFDS VNRRTCLHYA AYYGHADCVQ AILSAARSTP VALHWGYARF VNLRDDKGAT PLHLAARQRS PDCVNALLDS GSLVCASTSL YGSPGSTALH
201: LAARSGSIDC VRKLLAWGAD RLQRDGSGRI PYVVAMKYKH GACGALLNPS SAEPLVWPSP LKFIGELNEE AKLLLEQALM DANMEREKAI LNGTDYSLPS
301: PPPSFSDTAS DDDNMSEMSD SELCCICFEQ VCTIEVKDCG HQMCAQCTLA LCCHNKPNPT TSTVTPPVCP FCRSVIARLV VAQNNNKDDR SNSQDEVGDV
401: SSSKLRKHRK SINLGEEGSS FMGLSSIGSF GKVTGRGSGR ITADNELMNK PIS

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.