CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70022	Canola	cytosol	92.59	92.23
CDX98991	Canola	cytosol	92.2	92.02
AT5G07270.1	Thale cress	cytosol	92.01	92.01
KRH09105	Soybean	nucleus	74.27	74.56
PGSC0003DMT400037056	Potato	cytosol, nucleus, plastid	73.88	74.17
KRH38558	Soybean	nucleus	73.88	74.17
Solyc03g026060.2.1	Tomato	cytosol, nucleus, plastid	73.68	73.97
KRH35355	Soybean	nucleus	73.29	73.44
KRG91461	Soybean	cytosol, nucleus, plastid	73.29	73.44
GSMUA_Achr11P...	Banana	plastid	38.01	73.03
Os10t0521600-01	Rice	cytosol	31.97	67.77
GSMUA_Achr11P...	Banana	cytosol	62.57	62.33
HORVU1Hr1G048560.1	Barley	cytosol	62.18	61.35
TraesCS1D01G187300.1	Wheat	cytosol	62.18	61.35
TraesCS1B01G196800.1	Wheat	cytosol	62.18	61.35
TraesCS1A01G189100.1	Wheat	cytosol	62.18	61.35
EER92045	Sorghum	cytosol, nucleus, plastid	60.62	59.81
Zm00001d029663_P001	Maize	cytosol	60.23	59.42
GSMUA_Achr11P...	Banana	mitochondrion	28.85	51.03
CDY51284	Canola	cytosol	46.39	47.22
CDY02760	Canola	cytosol	46.2	46.84
CDY27425	Canola	cytosol	7.41	45.24
CDY25888	Canola	extracellular, vacuole	38.01	42.3
CDY65199	Canola	cytosol, mitochondrion, nucleus	13.26	31.63
CDX83303	Canola	cytosol	25.73	29.01
CDY47891	Canola	cytosol	25.34	28.57
CDX95759	Canola	cytosol	25.93	28.54
CDY15789	Canola	cytosol	25.34	28.51
CDX77214	Canola	cytosol	24.76	28.04
CDY31737	Canola	cytosol	24.95	26.83

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078JIR5	UniProt:A0A078JIR5	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY66355	ProteinID:CDY66355	ProteinID:CDY66355.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00053447001	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF12796	ScanProsite:PS00518
PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF35	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0004EC3A1F	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

BnaCnng50490DBnaCnng50490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIR5]

Coordinates

chrLK035218:-:14780..18193

Molecular Weight (calculated)

55353.1 Da

IEP (calculated)

6.742

GRAVY (calculated)

-0.106

Length

513 amino acids

Sequence
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDYVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFVPSQK LNPLPQTGVI TPRNKSQQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTTMD MIGAGSTPLH YAACGGNLKC CQILLSRGAS KMTLNCNGWL PIDIARMWSR HWLEPLLSPD SDVVIPSFPH SNYLSLPLLS ILNIAREFGL
301: QSATITDEVD ICAVCLERTC TVAAEGCDHQ LCVRCALYLC SSSNVPSVTV DPPGSIPCPL CRHGIVSFKR LPSSLTKETK LPMSLGLCAP CMLHTSDATD
401: QSSPTTEQQQ RSSKTRTSSV SSDMFCPVTC SPFPSVNIPM CTCNDGTCPN FETHGTERHS EEDDESSSPP RGTSEQEKIG EGQRLGKATT CSSMFWGRRS
501: CSRENQCNAE INA

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.