CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0521600-01	Rice	cytosol	39.29	13.64
GSMUA_Achr11P...	Banana	plastid	40.48	12.73
CDY51284	Canola	cytosol	51.19	8.53
CDY02760	Canola	cytosol	51.19	8.5
VIT_16s0100g00690.t01	Wine grape	nucleus	45.24	7.42
CDY66355	Canola	cytosol	45.24	7.41
CDX98991	Canola	cytosol	45.24	7.39
CDX70022	Canola	cytosol	45.24	7.38
TraesCS1D01G187300.1	Wheat	cytosol	45.24	7.31
TraesCS1B01G196800.1	Wheat	cytosol	45.24	7.31
TraesCS1A01G189100.1	Wheat	cytosol	45.24	7.31
HORVU1Hr1G048560.1	Barley	cytosol	45.24	7.31
GSMUA_Achr11P...	Banana	cytosol	44.05	7.18
Zm00001d029663_P001	Maize	cytosol	44.05	7.12
EER92045	Sorghum	cytosol, nucleus, plastid	44.05	7.12
CDY25888	Canola	extracellular, vacuole	34.52	6.29
CDX77214	Canola	cytosol	30.95	5.74
CDY47891	Canola	cytosol	28.57	5.27
CDX83303	Canola	cytosol	28.57	5.27
CDY15789	Canola	cytosol	28.57	5.26
CDX95759	Canola	cytosol	28.57	5.15
CDY31737	Canola	cytosol	28.57	5.03
GSMUA_Achr11P...	Banana	mitochondrion	4.76	1.38
CDY65199	Canola	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY27425	EnsemblPlantsGene:GSBRNA2T00037397001	Gene3D:1.25.40.20	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:IPR020683
InterPro:IPR036770	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22	ProteinID:CDY27425	ProteinID:CDY27425.1	SUPFAM:SSF48403
UniParc:UPI0004EE1719	UniProt:A0A078GLF3	MapMan:35.1	:	:	:

Description

BnaC03g64650DBnaC03g64650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLF3]

Coordinates

chrLK032204:+:178402..181302

Molecular Weight (calculated)

9679.5 Da

IEP (calculated)

6.777

GRAVY (calculated)

-0.443

Length

84 amino acids

Sequence
(BLAST)

1: MKNRDKPKTP APYSTFVVPN SPLYYAAGHE VNQFLLVESG VDIINLWNYR GKTALMQACQ HGHWEDIAFR VYNKCPQLLE PVEE

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.