CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020415.1-P	Field mustard	mitochondrion	91.63	92.92
CDY02760	Canola	cytosol	87.44	37.15
CDY25888	Canola	extracellular, vacuole	78.14	36.44
CDY51284	Canola	cytosol	74.88	31.94
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	44.65	18.97
GSMUA_Achr4P02080_001	Banana	nucleus	43.26	18.53
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	44.19	18.48
KRH18952	Soybean	cytosol, nucleus, plastid	43.26	18.31
EES05937	Sorghum	nucleus	40.93	17.71
KRH02947	Soybean	cytosol, nucleus, plastid	41.86	17.65
GSMUA_Achr3P04900_001	Banana	nucleus	39.07	17.54
GSMUA_Achr1P10240_001	Banana	nucleus	35.81	17.34
TraesCS6A01G352300.1	Wheat	cytosol	39.07	16.8
TraesCS6D01G335000.2	Wheat	cytosol	39.07	16.8
TraesCS6B01G385200.1	Wheat	cytosol	39.07	16.77
Os02t0791200-01	Rice	mitochondrion	40.0	16.2
TraesCS7A01G145900.1	Wheat	cytosol	35.81	16.01
HORVU7Hr1G029900.6	Barley	cytosol	35.35	15.97
Os08t0258200-02	Rice	nucleus	36.74	15.96
Zm00001d052057_P013	Maize	cytosol, mitochondrion, nucleus, plasma membrane, plastid	40.93	15.86
TraesCS7D01G147400.1	Wheat	cytosol	34.88	15.59
OQU80200	Sorghum	nucleus	34.42	15.32
TraesCS7B01G048300.1	Wheat	cytosol	33.95	15.18
Zm00001d050184_P010	Maize	plasma membrane	34.42	14.1
CDX70022	Canola	cytosol	32.09	13.4
CDY66355	Canola	cytosol	31.63	13.26
CDX98991	Canola	cytosol	31.63	13.23
CDY47891	Canola	cytosol	17.67	8.35
CDX77214	Canola	cytosol	16.74	7.95
CDX83303	Canola	cytosol	16.74	7.91
CDY15789	Canola	cytosol	16.74	7.89
CDY31737	Canola	cytosol	17.21	7.76
CDX95759	Canola	cytosol	16.74	7.73
CDY27425	Canola	cytosol	0.0	0.0
VIT_18s0001g14720.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078JEU3	UniProt:A0A078JEU3	EnsemblPlants:CDY65199	ProteinID:CDY65199
ProteinID:CDY65199.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00045369001	InterPro:IPR001841
InterPro:IPR013083	PFAM:PF00097	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EDAF2E	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

BnaA02g35390DBnaA02g35390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEU3]

Coordinates

chrLK034688:-:14201..15314

Molecular Weight (calculated)

23133.4 Da

IEP (calculated)

8.736

GRAVY (calculated)

-0.260

Length

215 amino acids

Sequence
(BLAST)

001: MIFTQYKVKT KRANPDALSR LLSKFVGFRE CGWRRGDCLT PCHDPCAVCL ERKCTVAADG CGHEFCTNCA LYLSTTNITS SKTSQATPGS VPCPLCRYGI
101: VSFTKLPHTI PTTTATSSRT SISLSFCTCS SSDVLNTGAL LTDPHYSCKP VVSRTGSQSV GSSSSFRSLS CRFPPSLCLG GSDVDEPQSR LMNGSYSRSG
201: LGSRRSTSEV EGKRY

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.