CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX94046
CDX98696
CDY03088
CDY17621
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	CDY03088	AT2G01950.1	19000166
AT2G28840.1	CDY17621	AT2G01950.1	19000166
AT2G28840.1	CDX76438	AT4G21670.1	18541146
AT2G28840.1	CDX79083	AT4G21670.1	18541146
AT2G28840.1	CDX94046	AT4G21670.1	18541146
AT2G28840.1	CDX98696	AT4G21670.1	18541146
AT2G28840.1	CDY31421	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011923.1-P	Field mustard	nucleus	99.12	98.69
CDY15789	Canola	cytosol	98.68	98.46
CDX83303	Canola	cytosol	92.97	92.97
AT2G28840.1	Thale cress	cytosol	91.65	91.45
CDX95759	Canola	cytosol	91.43	89.27
CDX77214	Canola	cytosol	86.37	86.75
CDY31737	Canola	cytosol	86.59	82.6
VIT_06s0004g04550.t01	Wine grape	nucleus	65.05	73.27
KRH10274	Soybean	nucleus	69.89	71.62
KRH23057	Soybean	nucleus	70.33	70.95
KRH29806	Soybean	nucleus	68.57	69.8
KRH24806	Soybean	nucleus	67.69	68.9
Solyc11g066020.1.1	Tomato	nucleus	66.81	68.16
PGSC0003DMT400001171	Potato	nucleus	66.37	67.71
PGSC0003DMT400077953	Potato	nucleus	64.84	66.59
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	64.4	66.59
Solyc06g076050.2.1	Tomato	nucleus	64.4	65.55
Os05t0112000-01	Rice	cytosol	64.4	65.11
GSMUA_Achr7P18180_001	Banana	cytosol	63.08	65.08
GSMUA_Achr10P...	Banana	nucleus	61.54	63.93
TraesCS1D01G035300.1	Wheat	cytosol	62.42	63.11
TraesCS1A01G034300.2	Wheat	cytosol	61.54	62.08
EES18892	Sorghum	nucleus	61.76	60.43
TraesCS4B01G207400.1	Wheat	cytosol	57.58	58.61
TraesCS1B01G050200.3	Wheat	cytosol	62.42	58.44
EER92481	Sorghum	nucleus	56.92	57.81
TraesCS4D01G208300.1	Wheat	cytosol	57.36	57.74
Os03t0275300-01	Rice	nucleus	58.9	57.63
TraesCS4A01G097000.2	Wheat	cytosol	57.36	57.49
TraesCS3D01G537900.1	Wheat	cytosol	56.92	56.55
TraesCS3A01G532700.1	Wheat	cytosol	57.36	56.49
TraesCS3B01G609500.1	Wheat	cytosol	57.36	56.25
GSMUA_Achr6P33430_001	Banana	nucleus	60.66	55.98
Os01t0974400-01	Rice	cytosol	54.73	55.83
EES02150	Sorghum	cytosol	56.26	52.89
TraesCS7D01G304700.1	Wheat	cytosol	22.86	50.98
Zm00001d025843_P001	Maize	plastid	22.42	49.51
HORVU1Hr1G043970.3	Barley	plastid	23.96	38.52
CDY27425	Canola	cytosol	5.27	28.57
CDX98991	Canola	cytosol	29.01	25.68
CDX70022	Canola	cytosol	29.01	25.63
CDY66355	Canola	cytosol	28.57	25.34
CDY02760	Canola	cytosol	26.81	24.11
CDY51284	Canola	cytosol	26.59	24.01
CDY25888	Canola	extracellular, vacuole	23.08	22.78
CDY65199	Canola	cytosol, mitochondrion, nucleus	8.35	17.67

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078IDB2	UniProt:A0A078IDB2	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY47891	ProteinID:CDY47891	ProteinID:CDY47891.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00088403001	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PFAM:PF13857	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	UniParc:UPI0004EF0BC2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaA07g14360DBnaA07g14360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDB2]

Coordinates

chrLK032743:-:145200..147544

Molecular Weight (calculated)

49413.3 Da

IEP (calculated)

7.829

GRAVY (calculated)

-0.178

Length

455 amino acids

Sequence
(BLAST)

001: MGQSMSCGVR PEHHGIFASV QCGDIVTVRR VMMTDPSLLN QATPYDRHSV LHVAAASGQI EILSLLLERF TNPDTLNRHK QTPLMLAAMY GRISCVKKLA
101: QVGANVLMFD SVNRRTCLHY AAYYGHADCV QAILSAAQSS PVAVHWGFAR FVNIRDDKGA TPLHLAARQR RPECVNVLLD SGSLVCASTS LYGSPGSTPL
201: HLAARSGSID CVRKLLAWGA DRLQRDASGR IPYVVAMKHK HGACGALLNP SSAEPLVWPS PLKFISELNE EAKLLLEQAL MDANREREKT ILKGTAFSLP
301: SPSYSDTASD DNMSEMSDSE MCCICFEQAC TIEVKDCGHQ MCAQCTLALC CHNKPNPTTS TVTPPVCPFC RSVISRLVIA QNNNNDSSKS QDEVVDREAG
401: DVSSSKHRKH RKSMNLGEES SSFMGLSSIG SFGKITGRGS GRIAADNELM DKPIL

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.