Factsheet for VIT_06s0004g04550.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0370g00040.t01
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT2G28840.1	VIT_00s0370g00040.t01	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10274	Soybean	nucleus	79.7	72.52
KRH23057	Soybean	nucleus	80.69	72.28
KRH29806	Soybean	nucleus	78.47	70.92
KRH24806	Soybean	nucleus	77.72	70.25
Solyc11g066020.1.1	Tomato	nucleus	75.25	68.16
PGSC0003DMT400077953	Potato	nucleus	74.5	67.95
VIT_08s0007g00200.t01	Wine grape	nucleus	74.5	67.79
PGSC0003DMT400001171	Potato	nucleus	74.5	67.49
GSMUA_Achr10P...	Banana	nucleus	72.52	66.89
GSMUA_Achr7P18180_001	Banana	cytosol	73.02	66.89
Solyc06g076050.2.1	Tomato	nucleus	74.01	66.89
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	72.77	66.82
CDY47891	Canola	cytosol	73.27	65.05
AT2G28840.1	Thale cress	cytosol	73.27	64.91
Bra011923.1-P	Field mustard	nucleus	73.27	64.77
CDY15789	Canola	cytosol	73.02	64.69
CDX83303	Canola	cytosol	72.77	64.62
Bra035664.1-P	Field mustard	nucleus	70.79	63.41
CDX77214	Canola	cytosol	71.04	63.36
Os05t0112000-01	Rice	cytosol	70.54	63.33
CDX95759	Canola	cytosol	72.03	62.45
TraesCS1D01G035300.1	Wheat	cytosol	68.07	61.11
EES18892	Sorghum	nucleus	69.8	60.65
TraesCS1A01G034300.2	Wheat	cytosol	67.57	60.53
CDY31737	Canola	cytosol	71.04	60.17
TraesCS4B01G207400.1	Wheat	cytosol	65.59	59.28
TraesCS4D01G208300.1	Wheat	cytosol	64.85	57.96
Bra000480.1-P	Field mustard	plastid	70.54	57.81
TraesCS4A01G097000.2	Wheat	cytosol	64.6	57.49
EER92481	Sorghum	nucleus	63.37	57.14
GSMUA_Achr6P33430_001	Banana	nucleus	69.31	56.8
TraesCS1B01G050200.3	Wheat	cytosol	68.07	56.58
Os03t0275300-01	Rice	nucleus	64.36	55.91
TraesCS3A01G532700.1	Wheat	cytosol	62.13	54.33
Os01t0974400-01	Rice	cytosol	59.9	54.26
TraesCS3D01G537900.1	Wheat	cytosol	61.39	54.15
EES02150	Sorghum	cytosol	64.6	53.93
TraesCS3B01G609500.1	Wheat	cytosol	61.63	53.66
Zm00001d025843_P001	Maize	plastid	25.99	50.97
TraesCS7D01G304700.1	Wheat	cytosol	20.3	40.2
HORVU1Hr1G043970.3	Barley	plastid	27.23	38.87
VIT_16s0100g00690.t01	Wine grape	nucleus	34.16	26.95
VIT_18s0001g14720.t01	Wine grape	cytosol	5.2	23.33
VIT_11s0037g01410.t01	Wine grape	cytosol, nucleus, plastid	28.96	22.99

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100263866	wikigene:100263866	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EMBL:AM485740
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAN68756	ProteinID:CAN68756.1	ProteinID:CCB43579
ProteinID:CCB43579.1	ncoils:Coil	UniProt:F6GV20	EMBL:FN594951	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
EntrezGene:LOC100263866	wikigene:LOC100263866	PFAM:PF12796	PFAM:PF13857	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850
UniParc:UPI00021099FD	ArrayExpress:VIT_06s0004g04550	EnsemblPlantsGene:VIT_06s0004g04550	EnsemblPlants:VIT_06s0004g04550.t01	unigene:Vvi.6645	RefSeq:XP_002283965
RefSeq:XP_002283965.1	RefSeq:XP_002283974	RefSeq:XP_002283974.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:

Description

No Description!

Coordinates

chr6:+:5519489..5522382

Molecular Weight (calculated)

43549.4 Da

IEP (calculated)

7.196

GRAVY (calculated)

-0.057

Length

404 amino acids

Sequence
(BLAST)

001: MGQGLSCGVS HEHGLFSAVQ VGDLESVESL LARDPSLLHQ TTVYDRHSAL HIAAANGQIE ILSMILDRSI SPDLLNRNKQ TPLMLAAMHG KISCVQKLLQ
101: AGANVLMFDS MHGRTCLHYA AYYGHSDCLQ AILSAAHSNP VADSWGFARF VNIRDGRGAT PLHLAARQRR PDCVHILLDN GALVCASTGG YGCPGSTPLH
201: LAARGGSLDC IRELLAWGAD RLQRDSSGRI PYVVALKHKH GACAALLNPT SAEPLVWPSP LKFISELNQD AKALLEQALM EANREREKSI LKGTSYSLPS
301: PSHSDVAVDD NISEASETEL CCICFDQVCT IEVQDCGHQM CAQCTLALCC HNKPNPTTAC LTAPVCPFCR SGIARLAVAK IKTNNEADSD LLQAEKIKKV
401: QKLK

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.