Factsheet for VIT_18s0001g14720.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0100g00690.t01	Wine grape	nucleus	65.56	11.52
GSMUA_Achr3P04900_001	Banana	nucleus	51.11	9.6
EES05937	Sorghum	nucleus	51.11	9.26
TraesCS6D01G335000.2	Wheat	cytosol	51.11	9.2
TraesCS6A01G352300.1	Wheat	cytosol	51.11	9.2
TraesCS6B01G385200.1	Wheat	cytosol	51.11	9.18
GSMUA_Achr4P02080_001	Banana	nucleus	51.11	9.16
KRH18952	Soybean	cytosol, nucleus, plastid	51.11	9.06
VIT_11s0037g01410.t01	Wine grape	cytosol, nucleus, plastid	51.11	9.04
HORVU7Hr1G029900.6	Barley	cytosol	47.78	9.03
KRH02947	Soybean	cytosol, nucleus, plastid	51.11	9.02
GSMUA_Achr1P10240_001	Banana	nucleus	44.44	9.01
TraesCS7A01G145900.1	Wheat	cytosol	47.78	8.94
TraesCS7B01G048300.1	Wheat	cytosol	47.78	8.94
TraesCS7D01G147400.1	Wheat	cytosol	47.78	8.94
OQU80200	Sorghum	nucleus	47.78	8.9
Os08t0258200-02	Rice	nucleus	47.78	8.69
Os02t0791200-01	Rice	mitochondrion	51.11	8.66
Zm00001d052057_P013	Maize	cytosol, mitochondrion, nucleus, plasma membrane, plastid	51.11	8.29
Zm00001d050184_P010	Maize	plasma membrane	47.78	8.19
VIT_06s0004g04550.t01	Wine grape	nucleus	23.33	5.2
VIT_08s0007g00200.t01	Wine grape	nucleus	24.44	4.95
CDY65199	Canola	cytosol, mitochondrion, nucleus	0.0	0.0
Bra020415.1-P	Field mustard	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CCB46058
ProteinID:CCB46058.1	UniProt:F6GZS1	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004455
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009082
GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
PFAM:PF12796	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF35	SUPFAM:SSF48403
UniParc:UPI000210A344	ArrayExpress:VIT_18s0001g14720	EnsemblPlantsGene:VIT_18s0001g14720	EnsemblPlants:VIT_18s0001g14720.t01	:	:

Description

No Description!

Coordinates

chr18:-:12773057..12773368

Molecular Weight (calculated)

10261.2 Da

IEP (calculated)

6.495

GRAVY (calculated)

-0.288

Length

90 amino acids

Sequence
(BLAST)

1: MENPFGCLVF NEWIVSVSRD RGSMEAKMFL DCNPRLAMYS TFNGLNSPFH FTTAEGRNEI VALLLKNEAD VNPRSYNGHT TLMQACRYGY

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.