Factsheet for GSMUA_Achr4P02080_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04900_001	Banana	nucleus	84.26	88.31
VIT_11s0037g01410.t01	Wine grape	cytosol, nucleus, plastid	72.31	71.32
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	71.31	70.75
GSMUA_Achr1P10240_001	Banana	nucleus	62.35	70.5
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	70.12	68.48
KRH18952	Soybean	cytosol, nucleus, plastid	68.13	67.32
KRH02947	Soybean	cytosol, nucleus, plastid	67.33	66.27
Bra020414.1-P	Field mustard	plastid	63.15	62.77
CDY02760	Canola	cytosol	63.15	62.65
CDY51284	Canola	cytosol	62.55	62.3
AT5G57740.1	Thale cress	cytosol	62.75	62.01
GSMUA_Achr11P...	Banana	plastid	32.27	60.67
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	62.15	60.58
CDY25888	Canola	extracellular, vacuole	51.0	55.53
VIT_18s0001g14720.t01	Wine grape	cytosol	9.16	51.11
GSMUA_Achr11P...	Banana	cytosol	49.8	48.54
GSMUA_Achr1P07900_001	Banana	cytosol, nucleus, plastid	42.03	46.17
CDY65199	Canola	cytosol, mitochondrion, nucleus	18.53	43.26
Bra020415.1-P	Field mustard	mitochondrion	17.53	41.51
GSMUA_Achr11P...	Banana	mitochondrion	20.32	35.17
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	25.7	29.32
GSMUA_Achr10P...	Banana	nucleus	25.5	29.22
GSMUA_Achr7P18180_001	Banana	cytosol	25.3	28.8
GSMUA_Achr6P33430_001	Banana	nucleus	23.9	24.34

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G02080_001	EnsemblPlants:GSMUA_Achr4P02080_001	EnsemblPlants:GSMUA_Achr4T02080_001
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0SKC5
PFAM:PF00023	PFAM:PF12796	PFAM:PF13637	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	UniParc:UPI000294DB48	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

Probable E3 ubiquitin-protein ligase XBOS32 [Source:GMGC_GENE;Acc:GSMUA_Achr4G02080_001]

Coordinates

chr4:-:1844071..1848859

Molecular Weight (calculated)

54240.3 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.002

Length

502 amino acids

Sequence
(BLAST)

001: MGFLGIMGNS FGCSASGERL VSAARDGDLQ EAKALLEYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL IESGVDINLR NIRGQTALMQ ACQYGHWEVV
101: QTLILFKANI HRTDYLNGGT ALHFASLNGH TRCIRLLLAD YIPSAPNFWN MMRGKSTRES STPDFDKSAL SKFVNQKADG GITALHMSAL NGHAESVHLL
201: LDLGASVFEV TVEDGSTIDL IGAGSTPLHY AACGGNAVCC QVLIARGASL TAENTNGWTP LMVARSWHRN WIEGILSKRP DGRIKILPSP YLSLPLMSII
301: RIAREVGWRG TNQSPACIDP CVVCLERRCT VAAEGCNHEF CTRCALYLCS TNSTSTVVPG PPGSIPCPLC RHAIVSFFKI PGMSPIRELP RTSLSLSLCA
401: TCPAVDGSDS TASMATQLCK PDFHCTRVPP LGSSSFRSLS CQRFPSMKLH SMLCMGVPET SPCLIRCCRS GSSLRRSASQ RESSTRSCLF AFSPIVDTSD
501: GS

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.