Factsheet for GSMUA_AchrUn_randomP20640_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P15100_001
GSMUA_Achr8P14120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr8P14120_001	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P18180_001	Banana	cytosol	81.36	81.18
GSMUA_Achr10P...	Banana	nucleus	74.32	74.66
VIT_06s0004g04550.t01	Wine grape	nucleus	66.82	72.77
Solyc11g066020.1.1	Tomato	nucleus	70.68	69.73
PGSC0003DMT400077953	Potato	nucleus	69.77	69.3
PGSC0003DMT400001171	Potato	nucleus	69.77	68.83
KRH10274	Soybean	nucleus	68.41	67.79
Solyc06g076050.2.1	Tomato	nucleus	68.86	67.79
Os05t0112000-01	Rice	cytosol	69.32	67.78
KRH23057	Soybean	nucleus	69.09	67.41
TraesCS1D01G035300.1	Wheat	cytosol	68.41	66.89
VIT_08s0007g00200.t01	Wine grape	nucleus	67.27	66.67
TraesCS1A01G034300.2	Wheat	cytosol	68.18	66.52
KRH29806	Soybean	nucleus	67.5	66.44
KRG99867	Soybean	nucleus	65.91	65.76
AT2G28840.1	Thale cress	cytosol	67.95	65.57
KRH46816	Soybean	cytosol	65.23	65.53
EES18892	Sorghum	nucleus	68.86	65.16
KRH24806	Soybean	nucleus	66.14	65.1
Bra035664.1-P	Field mustard	nucleus	66.36	64.75
Bra011923.1-P	Field mustard	nucleus	67.05	64.55
CDY15789	Canola	cytosol	66.82	64.47
CDY47891	Canola	cytosol	66.59	64.4
CDX83303	Canola	cytosol	66.59	64.4
GSMUA_Achr6P33430_001	Banana	nucleus	72.05	64.3
TraesCS4B01G207400.1	Wheat	cytosol	65.0	63.98
CDX77214	Canola	cytosol	65.45	63.58
CDX95759	Canola	cytosol	66.36	62.66
TraesCS4D01G208300.1	Wheat	cytosol	64.32	62.61
TraesCS4A01G097000.2	Wheat	cytosol	64.32	62.33
TraesCS1B01G050200.3	Wheat	cytosol	68.41	61.93
EER92481	Sorghum	nucleus	62.5	61.38
TraesCS3A01G532700.1	Wheat	cytosol	64.32	61.26
CDY31737	Canola	cytosol	66.36	61.22
TraesCS3D01G537900.1	Wheat	cytosol	63.64	61.14
TraesCS3B01G609500.1	Wheat	cytosol	63.86	60.56
Os03t0275300-01	Rice	nucleus	63.86	60.43
Solyc09g010690.2.1	Tomato	nucleus	61.14	59.65
Bra000480.1-P	Field mustard	plastid	65.0	58.01
Os01t0974400-01	Rice	cytosol	58.18	57.4
EES02150	Sorghum	cytosol	61.14	55.58
TraesCS7D01G304700.1	Wheat	cytosol	24.77	53.43
KRH46162	Soybean	cytosol	41.59	52.89
PGSC0003DMT400023028	Potato	nucleus	61.14	51.83
Zm00001d025843_P001	Maize	plastid	23.86	50.97
HORVU1Hr1G043970.3	Barley	plastid	25.68	39.93
GSMUA_Achr11P...	Banana	plastid	19.32	31.84
GSMUA_Achr1P10240_001	Banana	nucleus	29.32	29.05
GSMUA_Achr1P07900_001	Banana	cytosol, nucleus, plastid	28.86	27.79
GSMUA_Achr3P04900_001	Banana	nucleus	28.64	26.3
GSMUA_Achr4P02080_001	Banana	nucleus	29.32	25.7
GSMUA_Achr11P...	Banana	cytosol	30.0	25.63
GSMUA_Achr11P...	Banana	mitochondrion	13.86	21.03

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_AchrUn_randomG20640_001	EnsemblPlants:GSMUA_AchrUn_randomP20640_001	EnsemblPlants:GSMUA_AchrUn_randomT20640_001
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0UAX3
PFAM:PF12796	PFAM:PF13857	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128
PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000294837C	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Putative E3 ubiquitin-protein ligase XBAT31 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG20640_001]

Coordinates

chrchrUn_random:-:99775670..99778920

Molecular Weight (calculated)

47390.8 Da

IEP (calculated)

7.601

GRAVY (calculated)

-0.122

Length

440 amino acids

Sequence
(BLAST)

001: MGQRLSCAGS SYDRDFFTAV QAGHLETVRS AVDEDPSLLR RTTVYDRLSA LHIAAANGHV EILSMLLEKY ANPDIVNRHK QTPLMLAAIH GKIACVQKLL
101: EAGANILMFD SINGRTCLHH AAYYGHSNCL QAILSAAPIL VADSWGFARF VNVGDDNGAT PLHLAARQRR PECVHILLDN GALVCVSTGG YGHPGSTPLH
201: LAARGGSLDC VRELLAWGAD RLQRDSSGQI PYVVALKRNH GACAALLNPS AAEPLVWPSP LKFISELDPD AKALLEAALM EANKEREKKI LKGTKYLVLS
301: PANSDEVVDD MSEASDSDLC SICFHQVCTI EVRDCGHQMC AHCTLSLCCH NKPNPTTLSV PSPSCPFCRC NISRLVVAKT KAADEGDNAT NSMLRRSRRS
401: RNFSGGSGSF KGLTLAIGSF GRMGRGSGRI MDSDDTVDKP

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.