Factsheet for PGSC0003DMT400001171

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400057635
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT2G28840.1	PGSC0003DMT400057635	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066020.1.1	Tomato	nucleus	96.86	96.86
PGSC0003DMT400077953	Potato	nucleus	81.39	81.94
VIT_06s0004g04550.t01	Wine grape	nucleus	67.49	74.5
KRH29806	Soybean	nucleus	73.32	73.15
KRH24806	Soybean	nucleus	72.2	72.04
KRH10274	Soybean	nucleus	71.52	71.85
KRH23057	Soybean	nucleus	72.2	71.4
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	68.83	69.77
GSMUA_Achr7P18180_001	Banana	cytosol	67.94	68.71
AT2G28840.1	Thale cress	cytosol	69.96	68.42
GSMUA_Achr10P...	Banana	nucleus	66.37	67.58
CDX83303	Canola	cytosol	68.39	67.03
CDY15789	Canola	cytosol	67.94	66.45
CDY47891	Canola	cytosol	67.71	66.37
Os05t0112000-01	Rice	cytosol	66.82	66.22
Bra011923.1-P	Field mustard	nucleus	67.71	66.08
Bra035664.1-P	Field mustard	nucleus	66.59	65.85
CDX77214	Canola	cytosol	65.92	64.9
TraesCS1D01G035300.1	Wheat	cytosol	65.47	64.89
CDX95759	Canola	cytosol	67.49	64.59
EES18892	Sorghum	nucleus	66.59	63.87
TraesCS1A01G034300.2	Wheat	cytosol	64.57	63.86
CDY31737	Canola	cytosol	66.14	61.84
TraesCS4B01G207400.1	Wheat	cytosol	60.99	60.85
TraesCS1B01G050200.3	Wheat	cytosol	65.7	60.29
Bra000480.1-P	Field mustard	plastid	66.37	60.04
TraesCS4D01G208300.1	Wheat	cytosol	60.31	59.51
TraesCS4A01G097000.2	Wheat	cytosol	60.54	59.47
EER92481	Sorghum	nucleus	58.07	57.81
TraesCS3A01G532700.1	Wheat	cytosol	59.87	57.79
TraesCS3D01G537900.1	Wheat	cytosol	59.19	57.64
GSMUA_Achr6P33430_001	Banana	nucleus	63.23	57.2
TraesCS3B01G609500.1	Wheat	cytosol	59.42	57.11
Os01t0974400-01	Rice	cytosol	56.5	56.5
Os03t0275300-01	Rice	nucleus	58.52	56.13
EES02150	Sorghum	cytosol	59.42	54.75
PGSC0003DMT400023028	Potato	nucleus	61.66	52.99
TraesCS7D01G304700.1	Wheat	cytosol	22.65	49.51
Zm00001d025843_P001	Maize	plastid	22.65	49.03
HORVU1Hr1G043970.3	Barley	plastid	25.34	39.93
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	29.82	26.28
PGSC0003DMT400037056	Potato	cytosol, nucleus, plastid	30.04	26.22

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102591559	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841
InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0ZI10	PFAM:PF12796
EnsemblPlantsGene:PGSC0003DMG400000440	PGSC:PGSC0003DMG400000440	EnsemblPlants:PGSC0003DMT400001171	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850
UniParc:UPI000296D06D	RefSeq:XP_006348995.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	:

Description

Ring zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000440]

Coordinates

chr11:-:38605672..38608658

Molecular Weight (calculated)

48447.8 Da

IEP (calculated)

7.610

GRAVY (calculated)

-0.254

Length

446 amino acids

Sequence
(BLAST)

001: MGQGLSCGTS DEHGLFCAVQ LGDLDTLKSV LEKNPSLIHH STVYDRQSPL HIAAANGQIE VVTMLLNKSI NPDLLNRSKQ TPLMLAAMHG KISCVEKLIE
101: AGANILKFDS LKGRTCLHYA AYYGHFESLK AILSTARTSH VAASWGYARF VNVRDGKGAT PLHLAARQRR SECVHILLDN GALVCASTGG YGFPGSTPLH
201: LAARGGSLDC IRELLAWGAD RLHRDSTGRI PYMVALRYHH GACAALLNPS SAEPLVWPSP LKFISQLNDE AKALLERALM EANKEREKNI LKGTDYSPPS
301: PSQSDAGMDD NMSEVSDTEV CCICFDQLCT IEVQDCGHQM CAHCVLALCC HNKPNPTTTS PPEPVCPFCR SNIVQLQAIK ATKNDDTDSD FHSSKLRKTR
401: RSRNVSEGSS SFKGLSAVNS FGKMTGRGSG RIAADNEWID KPITLD

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.