Factsheet for PGSC0003DMT400077953

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400057635
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT2G28840.1	PGSC0003DMT400057635	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076050.2.1	Tomato	nucleus	96.61	95.75
PGSC0003DMT400001171	Potato	nucleus	81.94	81.39
VIT_06s0004g04550.t01	Wine grape	nucleus	67.95	74.5
KRH29806	Soybean	nucleus	72.01	71.36
KRH24806	Soybean	nucleus	70.88	70.25
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	69.3	69.77
KRH10274	Soybean	nucleus	69.53	69.37
KRH23057	Soybean	nucleus	70.43	69.18
GSMUA_Achr7P18180_001	Banana	cytosol	67.49	67.8
GSMUA_Achr10P...	Banana	nucleus	66.82	67.58
AT2G28840.1	Thale cress	cytosol	69.07	67.11
CDX83303	Canola	cytosol	67.04	65.27
Bra011923.1-P	Field mustard	nucleus	67.04	64.99
CDY47891	Canola	cytosol	66.59	64.84
Bra035664.1-P	Field mustard	nucleus	65.91	64.75
CDY15789	Canola	cytosol	66.59	64.69
Os05t0112000-01	Rice	cytosol	65.24	64.22
CDX77214	Canola	cytosol	65.46	64.02
CDX95759	Canola	cytosol	66.82	63.52
EES18892	Sorghum	nucleus	65.46	62.37
TraesCS1D01G035300.1	Wheat	cytosol	62.98	62.0
TraesCS1A01G034300.2	Wheat	cytosol	62.53	61.42
CDY31737	Canola	cytosol	65.46	60.8
TraesCS4B01G207400.1	Wheat	cytosol	60.05	59.51
Bra000480.1-P	Field mustard	plastid	65.01	58.42
TraesCS4D01G208300.1	Wheat	cytosol	59.59	58.41
TraesCS4A01G097000.2	Wheat	cytosol	59.82	58.37
TraesCS1B01G050200.3	Wheat	cytosol	63.43	57.82
GSMUA_Achr6P33430_001	Banana	nucleus	63.66	57.2
Os01t0974400-01	Rice	cytosol	56.66	56.28
EER92481	Sorghum	nucleus	56.88	56.25
TraesCS3D01G537900.1	Wheat	cytosol	57.79	55.9
TraesCS3A01G532700.1	Wheat	cytosol	58.24	55.84
TraesCS3B01G609500.1	Wheat	cytosol	57.79	55.17
Os03t0275300-01	Rice	nucleus	57.34	54.62
EES02150	Sorghum	cytosol	58.47	53.51
PGSC0003DMT400023028	Potato	nucleus	61.85	52.79
TraesCS7D01G304700.1	Wheat	cytosol	22.12	48.04
Zm00001d025843_P001	Maize	plastid	20.77	44.66
HORVU1Hr1G043970.3	Barley	plastid	23.7	37.1
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	28.89	25.3
PGSC0003DMT400037056	Potato	cytosol, nucleus, plastid	29.12	25.24

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102593583	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841
InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1CZ40	PFAM:PF00023
PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400030318	PGSC:PGSC0003DMG400030318	EnsemblPlants:PGSC0003DMT400077953	ScanProsite:PS00518	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	UniParc:UPI000295D8FF	RefSeq:XP_006350764.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

Ring zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030318]

Coordinates

chr6:+:56564175..56567014

Molecular Weight (calculated)

48188.7 Da

IEP (calculated)

7.441

GRAVY (calculated)

-0.155

Length

443 amino acids

Sequence
(BLAST)

001: MGQGLSCGTS DEHGLFTAVQ CGDLETVKAL FERNPSLVHH CTVYDRQSAL HIAAANGQIE VLSMLLDKSV KPDLLNRYKQ TPLMLAAMHG KISCVQKLIE
101: AGANILMFDS LNGRTCLHYA AYYGHSDCLK TILFAARTSH IASSWGYARF VNVNDGKGAT PLHLAARQRR ADCVHILLDN GALACASTDG YGFPGSTPLH
201: LAARAGSLDC IRELLAWGAE RLQRDDLGRI PYTIALRHKH GACAALLNPS SAEPLVWPSP LKFISELNEE AKHLLECALM EANKEREKNI LKGTTYSPTN
301: SDNGLDDNIS EVNDTEICCI CFDQVCTIQV QDCGHQMCAH CVLALCCHKK PNPTTTSPIA PVCPFCRSNI VQLDVIKLEK DDGSSHDVSS TKLRKSRRSR
401: NFSGGSSSFK GLSAVSSFGR MVGRGSGRIA AENEYIDKPI ILD

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.