Factsheet for TraesCS1B01G050200.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G373400.3
TraesCS2B01G390500.3
TraesCS2D01G369600.4
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1
TraesCS6A01G235300.4
TraesCS6B01G264000.3
TraesCS6D01G218000.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS2A01G373400.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS2B01G390500.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS2D01G369600.4	AT4G21670.1	18541146
AT2G28840.1	TraesCS6A01G235300.4	AT4G21670.1	18541146
AT2G28840.1	TraesCS6B01G264000.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS6D01G218000.3	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G035300.1	Wheat	cytosol	90.95	98.22
TraesCS1A01G034300.2	Wheat	cytosol	90.12	97.12
Os05t0112000-01	Rice	cytosol	80.86	87.33
EES18892	Sorghum	nucleus	79.42	83.01
Zm00001d035657_P001	Maize	cytosol	55.97	80.0
Zm00001d011060_P001	Maize	cytosol	70.37	76.68
HORVU1Hr1G005260.1	Barley	plastid	78.6	76.1
TraesCS3B01G609500.1	Wheat	cytosol	65.64	68.75
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	61.93	68.41
VIT_06s0004g04550.t01	Wine grape	nucleus	56.58	68.07
GSMUA_Achr10P...	Banana	nucleus	61.11	67.81
GSMUA_Achr7P18180_001	Banana	cytosol	61.52	67.8
TraesCS4B01G207400.1	Wheat	cytosol	60.7	66.0
PGSC0003DMT400001171	Potato	nucleus	60.29	65.7
Solyc11g066020.1.1	Tomato	nucleus	59.67	65.02
KRH29806	Soybean	nucleus	58.44	63.53
PGSC0003DMT400077953	Potato	nucleus	57.82	63.43
Solyc06g076050.2.1	Tomato	nucleus	58.02	63.09
KRH24806	Soybean	nucleus	57.82	62.86
KRH10274	Soybean	nucleus	57.41	62.84
KRH23057	Soybean	nucleus	58.02	62.53
CDY47891	Canola	cytosol	58.44	62.42
AT2G28840.1	Thale cress	cytosol	58.44	62.28
CDY15789	Canola	cytosol	58.44	62.28
Bra011923.1-P	Field mustard	nucleus	58.44	62.14
VIT_08s0007g00200.t01	Wine grape	nucleus	56.17	61.49
KRH46816	Soybean	cytosol	55.35	61.42
KRG99867	Soybean	nucleus	55.35	61.0
Bra035664.1-P	Field mustard	nucleus	56.58	60.98
CDX77214	Canola	cytosol	56.38	60.49
CDX83303	Canola	cytosol	56.17	60.0
CDX95759	Canola	cytosol	56.17	58.58
GSMUA_Achr6P33430_001	Banana	nucleus	58.85	58.01
Solyc09g010690.2.1	Tomato	nucleus	53.5	57.65
CDY31737	Canola	cytosol	56.38	57.44
Bra000480.1-P	Field mustard	plastid	54.73	53.96
PGSC0003DMT400023028	Potato	nucleus	53.29	49.9
KRH46162	Soybean	cytosol	35.39	49.71
TraesCS7B01G048300.1	Wheat	cytosol	25.51	25.78
TraesCS1B01G196800.1	Wheat	cytosol	26.75	25.0
TraesCS6B01G385200.1	Wheat	cytosol	25.51	24.75

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607
GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042742	GO:GO:0051865	InterPro:IPR001841
InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF12796
PFAM:PF13606	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1B01G050200	EnsemblPlants:TraesCS1B01G050200.3	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	TIGR:cd00204	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:+:30394122..30396311

Molecular Weight (calculated)

52227.2 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.202

Length

486 amino acids

Sequence
(BLAST)

001: MGHGVSCART GDEHDFFRAA QLGDLDALGA LLAADASLAR RATLYDRLSP LHIAAANGRL EVRPSSVRRQ LPPTSRSHGS LDPLEFLLFS ELSSSSQALS
101: MFLDRGAQPD AVDRHKQTPL MLAAMHGKIG CVLKLLQAGA NILMFDSVHA RTCLHHAAYY GHVDCLDAIL STARTTPVAG SWGFARFVNV RDDHGATPLH
201: LAARQGRPGC VQVLLENGAI VSALTGSYGF PGSTSLHLAA RSGDLDCIRK LLAWGADRLQ RDSAGRIPYV VAHKRNHGAC AALLNPSSAE PMVWPSPLKF
301: ISELDPEAKA LLEAALMEAN REREKKILKD AKCSPQSPLV YDDDHIDDDM FSEVSDTELC CICFDQACTI EVQDCGHQMC APCTLALCCH NKPNPATLTM
401: PSPACPFCRG SISRLVVARA QTADGGDPDR PASPQLAHRR SRRSHNLSEG SSSFKGLSSA ISKIARGSSR MAESDSAAMD KPEHDP

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.