Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G369600.4 | Wheat | nucleus | 95.68 | 95.78 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 95.68 | 95.78 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 83.77 | 89.23 |
| Os04t0529500-02 | Rice | extracellular | 71.76 | 72.99 |
| KXG26770 | Sorghum | nucleus | 71.02 | 71.55 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 69.02 | 69.53 |
| GSMUA_Achr11P... | Banana | cytosol | 2.74 | 66.67 |
| GSMUA_Achr11P... | Banana | nucleus | 54.16 | 55.45 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 55.43 | 55.43 |
| PGSC0003DMT400057635 | Potato | nucleus | 49.21 | 53.01 |
| Solyc02g078550.2.1 | Tomato | nucleus | 52.9 | 52.62 |
| KRH20483 | Soybean | nucleus | 52.16 | 51.56 |
| GSMUA_Achr11P... | Banana | extracellular | 9.91 | 51.37 |
| KRH50009 | Soybean | nucleus | 51.53 | 51.15 |
| KRH10835 | Soybean | nucleus | 50.9 | 50.42 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 41.73 | 50.25 |
| CDY31421 | Canola | cytosol | 44.15 | 50.0 |
| CDX76438 | Canola | cytosol | 44.47 | 49.82 |
| Bra020905.1-P | Field mustard | cytosol | 44.47 | 49.82 |
| KRH21480 | Soybean | nucleus | 50.26 | 49.69 |
| Bra038764.1-P | Field mustard | nucleus | 49.1 | 49.21 |
| CDX98696 | Canola | nucleus | 47.95 | 48.82 |
| CDX94046 | Canola | nucleus | 48.58 | 48.48 |
| AT4G21670.1 | Thale cress | nucleus | 49.21 | 48.29 |
| CDX79083 | Canola | nucleus | 41.94 | 46.33 |
| VIT_00s0370g00030.t01 | Wine grape | nucleus, plastid | 7.59 | 45.0 |
| Bra013546.1-P | Field mustard | nucleus | 40.78 | 44.08 |
| TraesCS3B01G401900.2 | Wheat | mitochondrion | 32.67 | 41.22 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G390500.3 | EnsemblPlantsGene:TraesCS2B01G390500 | Gene3D:3.30.160.20 | InterPro:FCP1_dom | InterPro:HAD-like_sf | InterPro:IPR004274 |
| InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF11 | PFAM:PF00035 | PFAM:PF03031 |
| PFscan:PS50137 | PFscan:PS50969 | SMART:SM00358 | SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 |
| TIGR:cd00048 | MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | : | : | : |
Description
No Description!
Coordinates
chr2B:-:554292972..554301047
Molecular Weight (calculated)
106126.0 Da
IEP (calculated)
5.728
GRAVY (calculated)
-0.490
Length
949 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKSMVYFGH ISIGEVELWP KGETNVAAAP WVREIRVDRL SPPSERCLPL AVLHTVSSGA LCFVMESRPS PATADDEPPS SLVAMHTACL RDNKTAVFPL
101: GAEEIHLVAM KPKSSLPNHA CFWGYKVPLG LYNSCLSMLN LRCLGIVFDL DETLIVANTT RSFEDRIDAL QRKLSKEIDP QRISGMLAEI KRYQEDRSML
201: KQYIDGDQVT DGGKVYKVQS EVVPPLADNH QPMIRPVIRL QEKSIILTRI NPSIRDTSVL VRLRPAWDDL RSYLIARGRK RFEVYVCTMA ERDYALEMWR
301: LLDPDSRLIN SVQLPHRLVC VKSGSKKSLL NVFHDGSCHP GMALVIDDRL KVWEEKDQCR VHVVPAFSPY YAPQAEFFAL PEMLHAMLGV ASSSKNILAI
401: WEFDEGLLPS ISEVHFDDEL NHVPSSPDVG NYLIPEDENA ASLNVNKDQM AFDGMADAEV ERRMKEAVCS VQAADPVTTN VDVIPVAANQ QFATSSSIPL
501: APPPGMVPLN NDQGPQPPSV SWPDAQSGMV DPLQGSPARE EGEVPESELD PDTRRRLLIL QHGQDTRDPT PPFAAEPSVQ ASVPPVQSQG NWFPVEDEMD
601: PRNLNRTSTD FHLESDAVHS DKSQPPHQPY FPAHDNPIFS DRLNHQNQRY SSQLPHSEDR QMLQNQAPTT YRSFSGEDMA TQRFHPGNRS SQMESGRQFV
701: QYTETSGAVL EEIAAKCGFK VEYRSTLCDT TELRFSIQIW IVGEKVGEGM GRTRKEAQRQ AANISLRNLA DRFLSFDPDK MTVPMDDGFS SNPNSFKYRG
801: IDGDNIVPVA STSDGSRYMH ERVDNSTKSA GSVAALKELC TAEGYNLVFQ AQPSPLDSLR REEVHAQIEI GGQILGKGVG VTWEEAKEQA ADGALRTLRY
901: MLGQRPQKRP GSPRSFASNY NNKRYKPDFQ PMVQRIPSGR YSRNDSRVP
101: GAEEIHLVAM KPKSSLPNHA CFWGYKVPLG LYNSCLSMLN LRCLGIVFDL DETLIVANTT RSFEDRIDAL QRKLSKEIDP QRISGMLAEI KRYQEDRSML
201: KQYIDGDQVT DGGKVYKVQS EVVPPLADNH QPMIRPVIRL QEKSIILTRI NPSIRDTSVL VRLRPAWDDL RSYLIARGRK RFEVYVCTMA ERDYALEMWR
301: LLDPDSRLIN SVQLPHRLVC VKSGSKKSLL NVFHDGSCHP GMALVIDDRL KVWEEKDQCR VHVVPAFSPY YAPQAEFFAL PEMLHAMLGV ASSSKNILAI
401: WEFDEGLLPS ISEVHFDDEL NHVPSSPDVG NYLIPEDENA ASLNVNKDQM AFDGMADAEV ERRMKEAVCS VQAADPVTTN VDVIPVAANQ QFATSSSIPL
501: APPPGMVPLN NDQGPQPPSV SWPDAQSGMV DPLQGSPARE EGEVPESELD PDTRRRLLIL QHGQDTRDPT PPFAAEPSVQ ASVPPVQSQG NWFPVEDEMD
601: PRNLNRTSTD FHLESDAVHS DKSQPPHQPY FPAHDNPIFS DRLNHQNQRY SSQLPHSEDR QMLQNQAPTT YRSFSGEDMA TQRFHPGNRS SQMESGRQFV
701: QYTETSGAVL EEIAAKCGFK VEYRSTLCDT TELRFSIQIW IVGEKVGEGM GRTRKEAQRQ AANISLRNLA DRFLSFDPDK MTVPMDDGFS SNPNSFKYRG
801: IDGDNIVPVA STSDGSRYMH ERVDNSTKSA GSVAALKELC TAEGYNLVFQ AQPSPLDSLR REEVHAQIEI GGQILGKGVG VTWEEAKEQA ADGALRTLRY
901: MLGQRPQKRP GSPRSFASNY NNKRYKPDFQ PMVQRIPSGR YSRNDSRVP
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.