Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G139400.2 | Wheat | plastid | 96.88 | 97.14 |
| TraesCS5A01G135100.1 | Wheat | nucleus, plastid | 97.15 | 96.88 |
| HORVU5Hr1G043380.1 | Barley | plastid | 92.26 | 90.65 |
| Os02t0516600-01 | Rice | nucleus, plastid | 70.65 | 69.89 |
| EES06877 | Sorghum | nucleus | 68.34 | 67.79 |
| Zm00001d016602_P001 | Maize | nucleus, plastid | 68.48 | 64.95 |
| GSMUA_Achr6P20560_001 | Banana | extracellular, golgi | 47.42 | 47.87 |
| KRH06829 | Soybean | nucleus | 44.29 | 46.18 |
| KRG94698 | Soybean | nucleus, plastid | 45.79 | 45.11 |
| CDY28532 | Canola | nucleus, plastid | 42.53 | 43.05 |
| CDY48977 | Canola | nucleus, plastid | 42.8 | 43.03 |
| VIT_14s0068g01130.t01 | Wine grape | plastid | 42.39 | 42.8 |
| Bra032944.1-P | Field mustard | nucleus, plastid | 42.93 | 41.74 |
| AT3G26730.1 | Thale cress | plastid | 41.85 | 39.9 |
| CDX71433 | Canola | extracellular | 7.2 | 39.55 |
| Solyc02g094510.2.1 | Tomato | nucleus, plastid | 23.23 | 35.55 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G133900.2 | EnsemblPlantsGene:TraesCS5B01G133900 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_C3HC4_RING-type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| PANTHER:PTHR12983 | PFAM:PF00097 | PFscan:PS50089 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | TIGR:cd16536 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:250596502..250611151
Molecular Weight (calculated)
80789.2 Da
IEP (calculated)
7.631
GRAVY (calculated)
-0.497
Length
736 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISPTESTR GSHPPAPRAS NPSPSPRHGT ASRRGSRSSP RASAAAPGVG RDGASTDSVG FIGQSVDTSQ ASQVVGFRIS GEEDDPYAQE VSDVSECQSS
101: GQGSLGLTVH SGGSVQADVQ RLELVGSLEI DHSSDGLQGN GALLASRKNQ AVNANYLLNF QYDPISRPQP RGPRTYPPRR QRKIKPYNKD LFLQANFKFV
201: VLDTGNYQID SMDPDKMLQW EDIICVRYCS PSEVRCPICL ESPLCPQITS CGHIYCFPCI LHYLLMGKED YRGECWKKCP LCFMMISAKG LTTIFVTQLQ
301: HFHIGDNVTF ALLGRPKNSL TPFLRNSSSE YSSLDEDPCN VFSKFILTSD VELSVRGAKS DLSNWLQMAD LGLVDDLEKL PYVSAALEQL EERMKYWSEF
401: RYYSSSPPLK NSSSPISSNK LKNSDNPKTS HTNSGHKLSP LSDGDIITGV SGLSVSPRYI NSKKGVPQKM EEGRAVAVDS NDQDSYTFYQ VIDGQHLILH
501: PLNMKCLLNH FGNSDMLPPR VTGKILELET ITQSEASRKR YRFLSHFSLT TTFQFCEIDL SDMLPPISLA PFMDEIKRRE KQRMQTAKKE EKDRVKAEVA
601: AAAQESAMRF EYTNFSRTQS DVMFSLDDFE ALGNNAAGPS TSPPAGERKL FSDVTRLGFA SAQGSPPLRA ETGDTNNEIT RDQGPVSASS VSFASILSST
701: RAGADSSVET PKPNGVGKAG KKRTKVLLST GGGRRY
101: GQGSLGLTVH SGGSVQADVQ RLELVGSLEI DHSSDGLQGN GALLASRKNQ AVNANYLLNF QYDPISRPQP RGPRTYPPRR QRKIKPYNKD LFLQANFKFV
201: VLDTGNYQID SMDPDKMLQW EDIICVRYCS PSEVRCPICL ESPLCPQITS CGHIYCFPCI LHYLLMGKED YRGECWKKCP LCFMMISAKG LTTIFVTQLQ
301: HFHIGDNVTF ALLGRPKNSL TPFLRNSSSE YSSLDEDPCN VFSKFILTSD VELSVRGAKS DLSNWLQMAD LGLVDDLEKL PYVSAALEQL EERMKYWSEF
401: RYYSSSPPLK NSSSPISSNK LKNSDNPKTS HTNSGHKLSP LSDGDIITGV SGLSVSPRYI NSKKGVPQKM EEGRAVAVDS NDQDSYTFYQ VIDGQHLILH
501: PLNMKCLLNH FGNSDMLPPR VTGKILELET ITQSEASRKR YRFLSHFSLT TTFQFCEIDL SDMLPPISLA PFMDEIKRRE KQRMQTAKKE EKDRVKAEVA
601: AAAQESAMRF EYTNFSRTQS DVMFSLDDFE ALGNNAAGPS TSPPAGERKL FSDVTRLGFA SAQGSPPLRA ETGDTNNEIT RDQGPVSASS VSFASILSST
701: RAGADSSVET PKPNGVGKAG KKRTKVLLST GGGRRY
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.