Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26730.1 | CDX76438 | AT4G21670.1 | 18541146 |
| AT3G26730.1 | CDX79083 | AT4G21670.1 | 18541146 |
| AT3G26730.1 | CDX94046 | AT4G21670.1 | 18541146 |
| AT3G26730.1 | CDX98696 | AT4G21670.1 | 18541146 |
| AT3G26730.1 | CDY31421 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28532 | Canola | nucleus, plastid | 88.81 | 16.37 |
| CDY48977 | Canola | nucleus, plastid | 85.07 | 15.57 |
| Bra032944.1-P | Field mustard | nucleus, plastid | 85.07 | 15.06 |
| AT3G26730.1 | Thale cress | plastid | 73.88 | 12.82 |
| Solyc02g094510.2.1 | Tomato | nucleus, plastid | 34.33 | 9.56 |
| KRH06829 | Soybean | nucleus | 47.76 | 9.07 |
| VIT_14s0068g01130.t01 | Wine grape | plastid | 48.51 | 8.92 |
| KRG94698 | Soybean | nucleus, plastid | 48.51 | 8.7 |
| GSMUA_Achr6P20560_001 | Banana | extracellular, golgi | 40.3 | 7.41 |
| TraesCS5A01G135100.1 | Wheat | nucleus, plastid | 40.3 | 7.32 |
| Os02t0516600-01 | Rice | nucleus, plastid | 40.3 | 7.26 |
| TraesCS5D01G139400.2 | Wheat | plastid | 39.55 | 7.22 |
| TraesCS5B01G133900.2 | Wheat | nucleus, plastid | 39.55 | 7.2 |
| EES06877 | Sorghum | nucleus | 39.55 | 7.14 |
| Zm00001d016602_P001 | Maize | nucleus, plastid | 41.04 | 7.09 |
| HORVU5Hr1G043380.1 | Barley | plastid | 38.81 | 6.94 |
Protein Annotations
| EnsemblPlants:CDX71433 | EnsemblPlantsGene:GSBRNA2T00148279001 | ProteinID:CDX71433 | ProteinID:CDX71433.1 | SEG:seg | UniParc:UPI0004EDDFC5 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC04g16680D
Coordinates
chrLK031793:+:850920..860557
Molecular Weight (calculated)
14325.8 Da
IEP (calculated)
11.166
GRAVY (calculated)
-0.331
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHLTILIIY SLYGFADDLI RNPFVLALGN SAPVVSSSPP TIGERSSFSH VTRLGFAAGH DSPNLNNEPT TNVQSSSSSS EVTNATTGAR NTNTTSFASV
101: TSRTPTTPVA IKEPGKRGKK QSRVLLSTTS VRRY
101: TSRTPTTPVA IKEPGKRGKK QSRVLLSTTS VRRY
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.