Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G133900.2 | Wheat | nucleus, plastid | 97.14 | 96.88 |
| TraesCS5A01G135100.1 | Wheat | nucleus, plastid | 97.0 | 96.48 |
| HORVU5Hr1G043380.1 | Barley | plastid | 92.23 | 90.39 |
| Os02t0516600-01 | Rice | nucleus, plastid | 71.39 | 70.43 |
| EES06877 | Sorghum | nucleus | 69.35 | 68.6 |
| Zm00001d016602_P001 | Maize | nucleus, plastid | 69.48 | 65.72 |
| GSMUA_Achr6P20560_001 | Banana | extracellular, golgi | 47.68 | 48.01 |
| KRH06829 | Soybean | nucleus | 44.69 | 46.46 |
| KRG94698 | Soybean | nucleus, plastid | 45.91 | 45.11 |
| CDY28532 | Canola | nucleus, plastid | 42.64 | 43.05 |
| CDY48977 | Canola | nucleus, plastid | 42.92 | 43.03 |
| VIT_14s0068g01130.t01 | Wine grape | plastid | 42.37 | 42.66 |
| Bra032944.1-P | Field mustard | nucleus, plastid | 42.92 | 41.61 |
| AT3G26730.1 | Thale cress | plastid | 42.23 | 40.16 |
| CDX71433 | Canola | extracellular | 7.22 | 39.55 |
| Solyc02g094510.2.1 | Tomato | nucleus, plastid | 23.3 | 35.55 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G139400.2 | EnsemblPlantsGene:TraesCS5D01G139400 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_C3HC4_RING-type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| PANTHER:PTHR12983 | PFAM:PF00097 | PFscan:PS50089 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | TIGR:cd16536 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:222419655..222429581
Molecular Weight (calculated)
80829.3 Da
IEP (calculated)
7.296
GRAVY (calculated)
-0.486
Length
734 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISPTESTR GFHPPAPRAS NPSPSPRHGT ASRRGSRSSP RASAAAPGVG RDGASPDSVG FIGQSVDTPQ AVVGFRISGE EDDPYAQEVS DVSECQSSGQ
101: GSLGLTVHSG GSVQADVQRL ELVGSLEIDH SSDGLQGNGA LMASRKNQAV NANYLLNFQY DPISRPQPRG PRTYPPRRQR KIKPYNKDLF LQANFKFVVL
201: DTGNYQIDSM DPDKMLQWED IICVRYCSPS EVRCPICLES PLCPQITSCG HIYCFPCILH YLLMGKEDYR GECWKKCPLC FMMISAKELT TIFVTQLQHF
301: HIGDNVTFTL LGRSKNSLTP FLRNSPSEYS SLDEDPCNVF SKFILTSDVE LSVRGAKSDL SNWLQMADLG LVDDLEKLPY VSAALEQLEE RMKYWSEFRY
401: YSSSPPLKNS SSPISSNKLK NSDNPKTSHT NSGHKLSPLS DGDIITGVSG LSVSPLYINS KKGVPQKMEE RRAVAVDSNE QDSYTFYQVI DGQHLILHPL
501: NMKCLLNHFG NSDMLPPRVT GKILELETIT QSEASRKRYR FLSHFSLTTT FQFCEIDLSD MLPPASLAPF MDEIKRREKQ RIQTAKKEEK DRVKAEVAAA
601: AQESAMRFEY TNFSRTQSDV MFSLDDFEAL GNNAAGPSTS PPAGERKLFS DVTRLGFASA LDSPPLRAET GDTNNEITRD QGPVAASSVS FASILSSTRA
701: SADSSAEMPK PNGVGKAGKK RTKVLLSTGG GRRY
101: GSLGLTVHSG GSVQADVQRL ELVGSLEIDH SSDGLQGNGA LMASRKNQAV NANYLLNFQY DPISRPQPRG PRTYPPRRQR KIKPYNKDLF LQANFKFVVL
201: DTGNYQIDSM DPDKMLQWED IICVRYCSPS EVRCPICLES PLCPQITSCG HIYCFPCILH YLLMGKEDYR GECWKKCPLC FMMISAKELT TIFVTQLQHF
301: HIGDNVTFTL LGRSKNSLTP FLRNSPSEYS SLDEDPCNVF SKFILTSDVE LSVRGAKSDL SNWLQMADLG LVDDLEKLPY VSAALEQLEE RMKYWSEFRY
401: YSSSPPLKNS SSPISSNKLK NSDNPKTSHT NSGHKLSPLS DGDIITGVSG LSVSPLYINS KKGVPQKMEE RRAVAVDSNE QDSYTFYQVI DGQHLILHPL
501: NMKCLLNHFG NSDMLPPRVT GKILELETIT QSEASRKRYR FLSHFSLTTT FQFCEIDLSD MLPPASLAPF MDEIKRREKQ RIQTAKKEEK DRVKAEVAAA
601: AQESAMRFEY TNFSRTQSDV MFSLDDFEAL GNNAAGPSTS PPAGERKLFS DVTRLGFASA LDSPPLRAET GDTNNEITRD QGPVAASSVS FASILSSTRA
701: SADSSAEMPK PNGVGKAGKK RTKVLLSTGG GRRY
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.