Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0639000-01 | |
| Os04t0529500-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26730.1 | Os02t0639000-01 | AT4G21670.1 | 18541146 |
| AT3G26730.1 | Os04t0529500-02 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G139400.2 | Wheat | plastid | 70.43 | 71.39 |
| TraesCS5A01G135100.1 | Wheat | nucleus, plastid | 70.16 | 70.73 |
| TraesCS5B01G133900.2 | Wheat | nucleus, plastid | 69.89 | 70.65 |
| EES06877 | Sorghum | nucleus | 69.76 | 69.95 |
| HORVU5Hr1G043380.1 | Barley | plastid | 68.82 | 68.36 |
| Zm00001d016602_P001 | Maize | nucleus, plastid | 69.35 | 66.49 |
| GSMUA_Achr6P20560_001 | Banana | extracellular, golgi | 48.39 | 49.38 |
| KRH06829 | Soybean | nucleus | 44.62 | 47.03 |
| KRG94698 | Soybean | nucleus, plastid | 46.37 | 46.18 |
| VIT_14s0068g01130.t01 | Wine grape | plastid | 43.95 | 44.86 |
| CDY28532 | Canola | nucleus, plastid | 43.55 | 44.57 |
| CDY48977 | Canola | nucleus, plastid | 43.82 | 44.54 |
| Bra032944.1-P | Field mustard | nucleus, plastid | 44.35 | 43.59 |
| AT3G26730.1 | Thale cress | plastid | 42.61 | 41.06 |
| CDX71433 | Canola | extracellular | 7.26 | 40.3 |
| Solyc02g094510.2.1 | Tomato | nucleus, plastid | 23.92 | 37.01 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:4329478 | ProteinID:BAD38143.1 | ProteinID:BAF08872.1 | ProteinID:BAS78902.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 |
| EnsemblPlantsGene:Os02g0516600 | EnsemblPlants:Os02t0516600-01 | PFAM:PF00097 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR12983 |
| UniProt:Q67UM6 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00004264AB | RefSeq:XP_015626394.1 | InterPro:Znf_C3HC4_RING-type |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : |
Description
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0516600-01);Similar to zinc finger, C3HC4 type family protein. (Os02t0516600-02)
Coordinates
chr2:-:18649297..18655266
Molecular Weight (calculated)
82448.9 Da
IEP (calculated)
7.206
GRAVY (calculated)
-0.603
Length
744 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISPSESTR GSQPLAPRPS NPSPGPRHGN SSAPPRRRGR RSPTAPVSPP SAAGGSGGPS SVSVVPAIRE YVDTSQKVVG FRISREENDD SYTQEVGNFS
101: ECHSSEHGNS GFSANNGTSG QATPQRPELM ESLKIDLSTT NSSGNGTQVT ARKNQSVNAN YLLNFHYDPI SRPQPRGPRT YPTRRQRKIR PYNKDLFLQA
201: NFKFVVLDTG SYEIELMDPD KMLQWEDIVC VRYYSPCEVQ CPICLESPLC PQITSCGHIY CFPCILRYLL MGKEDYKGES WKKCPLCFMM ISTKELYTIY
301: ITQVQHFHVG DNVTFTLLSR SKNSLTPSIK NLTDESTIDE DPCSAFSKFI LTSDVELSVR EAKTDLVNWL HMADLGLVDD LEKLPYVSTA LEQLEERMKY
401: WSEYRNFSVS PPLKDSFSPV TSSKSRNPNN AQSSRQNSEH KLSPLSDEDM IAGVSELCIS PESNKIFNKG MPSKTEERCM APIDSNENDT YNFYQVSDGQ
501: HLILHPLNMK CLINHYGSSD MLPPRIHGKI LELETVTQSE ATRKRYRYLS HFSLTTTFQF CEIDLGDMLP PSSLAPFMDE IKKREKQRKR TAKKEESDRV
601: KAEVAAAAQA SAMLFEHTSF SPSSGPHGDF MFSLDDFEAL GNNAGPSTSP PASERKLFSD VARLGFASAQ DSPPLRVESG DLTGKSESTG EQGPAATPAL
701: SFASIISSTR ASDNSLDTHK PNVVGKKGKK PTKVLLSTGG GRRY
101: ECHSSEHGNS GFSANNGTSG QATPQRPELM ESLKIDLSTT NSSGNGTQVT ARKNQSVNAN YLLNFHYDPI SRPQPRGPRT YPTRRQRKIR PYNKDLFLQA
201: NFKFVVLDTG SYEIELMDPD KMLQWEDIVC VRYYSPCEVQ CPICLESPLC PQITSCGHIY CFPCILRYLL MGKEDYKGES WKKCPLCFMM ISTKELYTIY
301: ITQVQHFHVG DNVTFTLLSR SKNSLTPSIK NLTDESTIDE DPCSAFSKFI LTSDVELSVR EAKTDLVNWL HMADLGLVDD LEKLPYVSTA LEQLEERMKY
401: WSEYRNFSVS PPLKDSFSPV TSSKSRNPNN AQSSRQNSEH KLSPLSDEDM IAGVSELCIS PESNKIFNKG MPSKTEERCM APIDSNENDT YNFYQVSDGQ
501: HLILHPLNMK CLINHYGSSD MLPPRIHGKI LELETVTQSE ATRKRYRYLS HFSLTTTFQF CEIDLGDMLP PSSLAPFMDE IKKREKQRKR TAKKEESDRV
601: KAEVAAAAQA SAMLFEHTSF SPSSGPHGDF MFSLDDFEAL GNNAGPSTSP PASERKLFSD VARLGFASAQ DSPPLRVESG DLTGKSESTG EQGPAATPAL
701: SFASIISSTR ASDNSLDTHK PNVVGKKGKK PTKVLLSTGG GRRY
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.