CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 6
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10835
KRH20483
KRH21480
KRH50009

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26730.1	KRH10835	AT4G21670.1	18541146
AT3G26730.1	KRH20483	AT4G21670.1	18541146
AT3G26730.1	KRH21480	AT4G21670.1	18541146
AT3G26730.1	KRH50009	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06829	Soybean	nucleus	83.8	88.67
VIT_14s0068g01130.t01	Wine grape	plastid	55.82	57.2
CDY48977	Canola	nucleus, plastid	48.86	49.86
CDY28532	Canola	nucleus, plastid	48.33	49.66
CDX71433	Canola	extracellular	8.7	48.51
Bra032944.1-P	Field mustard	nucleus, plastid	49.0	48.35
Os02t0516600-01	Rice	nucleus, plastid	46.18	46.37
AT3G26730.1	Thale cress	plastid	47.66	46.11
GSMUA_Achr6P20560_001	Banana	extracellular, golgi	44.85	45.95
TraesCS5D01G139400.2	Wheat	plastid	45.11	45.91
TraesCS5B01G133900.2	Wheat	nucleus, plastid	45.11	45.79
TraesCS5A01G135100.1	Wheat	nucleus, plastid	44.98	45.53
HORVU5Hr1G043380.1	Barley	plastid	44.44	44.33
EES06877	Sorghum	nucleus	43.64	43.94
Zm00001d016602_P001	Maize	nucleus, plastid	43.24	41.62
Solyc02g094510.2.1	Tomato	nucleus, plastid	25.7	39.92

Protein Annotations

EntrezGene:100818033	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02012016	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G103000
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	UniProt:K7MXM8
EnsemblPlants:KRG94698	ProteinID:KRG94698	ProteinID:KRG94698.1	PFAM:PF00097	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR12983	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000233E028	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:35110643..35118078

Molecular Weight (calculated)

82970.0 Da

IEP (calculated)

7.697

GRAVY (calculated)

-0.665

Length

747 amino acids

Sequence
(BLAST)

001: MSILPSQTQA ASSSSSSAPS PNPNPQHGTG NPIPQPFSSL SPSPINLAFG SLQISDTPGS SSSAAQDSGG SSGKVTEVGS PSGVMVSPEQ NSRTRSRSHG
101: ARWTRTRTGT VSYHRNQQTP GSVSSHGSAP LPGRKAQTVN GNYLLNFQYD PISRSQPRGP PPSPTTRRHR KRKPYSKDLF LQANYKFTVL GSGNYSPESM
201: DPDKMLQWED IICVTYLTPF SVQCPICLEY PLCPQITSCG HIFCFPCILQ YLLMGEEDHK GDSWKRCPLC FVMISAKDLY TVHITNVKQY QVRDNAEFTF
301: LTRKKDSFTL SLKNKQETNI TSRANEDICD PFSKFTLTSD VDLSVRHAIS DLDGWLARAD SGLVDDLEKL PYVCAAMQQL EQRKRYWSEL RSHDSEKSSK
401: LNDYEHQIPS TVANSVDSDD ENCSNGSRTS SSDFLDQNKV MMLDKSTAGI CLDQKLDVEK ELIEQEMNLS SSYEEKNDIQ RHSSGVVGDV KENDSYSFYQ
501: AADGQHLILH PLNMKCLLHH YGSYDMLPHR ISGRILQLES VTQSEAIRRR YRFLSHFPLT TTFQLCEVDL SEMLPPEAFS PFMDEIKKRA NQRKQLARKE
601: KKEKIMAEAT AAYSLPISLS HQFTSRNDPP TFSMDDFEAL GNSTISSSPP LAGERKSFSN VTRLGFAAAH DSPSLQIQET SGLHNNNTTA DSSVTTGLRN
701: GETQSYSNAT SRTESNISSN APKTNELGKK GKKPNRVLLS TAGGRRY

Best Arabidopsis Sequence Match ( AT3G26730.1 )
(BLAST)

001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY

Arabidopsis Description

Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.