CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX94046
CDX98696
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26730.1	CDX76438	AT4G21670.1	18541146
AT3G26730.1	CDX79083	AT4G21670.1	18541146
AT3G26730.1	CDX94046	AT4G21670.1	18541146
AT3G26730.1	CDX98696	AT4G21670.1	18541146
AT3G26730.1	CDY31421	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28532	Canola	nucleus, plastid	95.77	96.42
Bra032944.1-P	Field mustard	nucleus, plastid	97.13	93.92
CDX71433	Canola	extracellular	15.57	85.07
AT3G26730.1	Thale cress	plastid	77.05	73.06
KRH06829	Soybean	nucleus	47.54	49.29
KRG94698	Soybean	nucleus, plastid	49.86	48.86
VIT_14s0068g01130.t01	Wine grape	plastid	47.68	47.87
Os02t0516600-01	Rice	nucleus, plastid	44.54	43.82
GSMUA_Achr6P20560_001	Banana	extracellular, golgi	43.17	43.35
TraesCS5A01G135100.1	Wheat	nucleus, plastid	43.31	42.95
TraesCS5D01G139400.2	Wheat	plastid	43.03	42.92
TraesCS5B01G133900.2	Wheat	nucleus, plastid	43.03	42.8
EES06877	Sorghum	nucleus	42.76	42.18
HORVU5Hr1G043380.1	Barley	plastid	42.76	41.79
Zm00001d016602_P001	Maize	nucleus, plastid	42.9	40.46
Solyc02g094510.2.1	Tomato	nucleus, plastid	24.59	37.42

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078IG63	UniProt:A0A078IG63	EnsemblPlants:CDY48977	ProteinID:CDY48977
ProteinID:CDY48977.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00092175001
InterPro:IPR001841	InterPro:IPR013083	PFAM:PF00097	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR12983
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EF0982	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

BnaA02g28190DBnaA02g28190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG63]

Coordinates

chrLK032805:-:25834..29450

Molecular Weight (calculated)

81400.1 Da

IEP (calculated)

7.843

GRAVY (calculated)

-0.715

Length

732 amino acids

Sequence
(BLAST)

001: MSILPPTHIQ GHESSPPPSN SSLNPSSEHG NSSLVSPPPS SRIGSLTLAG SSLPTSDFSS GSREPIAAAE EEHSHGSSKE ITQIGAGKGS FSPPSADRHD
101: HLRYDSRRNR SRGRNARAAA AASSSHVQQQ HNATGPSNSP RGSSHHNPTG RRANMISGNH LLNFQYDPIS PQQFRPPPPP QRRQMHRRRP YNKDLFLQAN
201: YKFVVLDTGD HSPDSMDPDK MLQWDNIICV RYSTPSPVQC PICLEYPLCP QITSCGHIFC FPCVLQYLLI GEDNHKAECF KRCPLCFVMI SPRELYTVYI
301: ENVKQYSVGD PIEFILLTRK KDSFAPTRKN EIDSDVPDPF SKFTFTQDVD LSVRQAVSEL DGWIARADPG LVDDLEKHLY VNAALERLEE RKLYWKEQRL
401: SNCCKPSAKP RSHVPSSSPP DVSRAVGKSD EESQSSLEKS CDDGHSLVEK DAPLMPSSDN GSKRPLLHQN DSKDQKDNDD AYNFYQSVDG QHIILHSLNM
501: KCLLHHYGSN DFLPTRVSGK IVEMETVTQS EAIRRRYRFL SHFSLTTTFQ ICEIDMRESL PPEAFAPFMD EIKKREKQRK ERARKERKDK IKAEVAAAAE
601: LAPLMASCGQ FYYGDDPSFS LDDFEALGNS APVVSSSPPT IGERSSFSHV TRLGFAAGHD SPNLNNEPTN IQSSSSNSEV SNATTGARNT NTTSFASVTS
701: RTPTTPVAIK EPGKRGKKQS RVLLSTTSVR RY

Best Arabidopsis Sequence Match ( AT3G26730.1 )
(BLAST)

001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY

Arabidopsis Description

Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.