Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76438 | Canola | cytosol | 95.35 | 94.33 |
| Bra020905.1-P | Field mustard | cytosol | 93.56 | 92.56 |
| Zm00001d029743_P001 | Maize | cytosol | 10.02 | 73.04 |
| CDX94046 | Canola | nucleus | 80.43 | 70.87 |
| CDX98696 | Canola | nucleus | 74.34 | 66.85 |
| GSMUA_Achr11P... | Banana | cytosol | 3.1 | 66.67 |
| AT4G21670.1 | Thale cress | nucleus | 75.18 | 65.15 |
| CDX79083 | Canola | nucleus | 64.32 | 62.75 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 49.16 | 52.28 |
| PGSC0003DMT400057635 | Potato | nucleus | 53.58 | 50.96 |
| KRH50009 | Soybean | nucleus | 58.11 | 50.94 |
| KRH20483 | Soybean | nucleus | 57.88 | 50.52 |
| KRH10835 | Soybean | nucleus | 56.8 | 49.69 |
| KRH21480 | Soybean | nucleus | 55.97 | 48.85 |
| GSMUA_Achr11P... | Banana | extracellular | 10.62 | 48.63 |
| Solyc02g078550.2.1 | Tomato | nucleus | 55.25 | 48.53 |
| EES05486 | Sorghum | cytosol | 50.95 | 45.72 |
| Os02t0639000-01 | Rice | cytosol | 51.19 | 45.64 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 51.19 | 45.25 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 50.0 | 44.96 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 50.84 | 44.89 |
| GSMUA_Achr11P... | Banana | nucleus | 49.52 | 44.77 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 50.24 | 44.69 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 47.49 | 44.67 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 50.0 | 44.53 |
| Os04t0529500-02 | Rice | extracellular | 49.52 | 44.48 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 49.88 | 44.37 |
| TraesCS2D01G369600.4 | Wheat | nucleus | 50.12 | 44.3 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 50.0 | 44.15 |
| Zm00001d017373_P001 | Maize | nucleus | 50.36 | 43.87 |
| KXG26770 | Sorghum | nucleus | 48.45 | 43.1 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 47.73 | 42.69 |
| CDX80779 | Canola | nucleus | 38.31 | 40.63 |
| CDY11208 | Canola | nucleus | 38.19 | 40.51 |
| CDX81142 | Canola | cytosol | 9.31 | 38.24 |
| CDX81143 | Canola | extracellular, plasma membrane, plastid | 6.21 | 29.38 |
Protein Annotations
| MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | UniProt:A0A078H0V6 | EnsemblPlants:CDY31421 | ProteinID:CDY31421 |
| ProteinID:CDY31421.1 | InterPro:FCP1_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0070940 | EnsemblPlantsGene:GSBRNA2T00047648001 |
| InterPro:HAD-like_sf | InterPro:IPR004274 | InterPro:IPR014720 | PFAM:PF00035 | PFAM:PF03031 | PFscan:PS50137 |
| PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF17 | SMART:SM00358 | SMART:SM00577 | SUPFAM:SSF54768 |
| SUPFAM:SSF56784 | UniParc:UPI0004EF24C8 | InterPro:dsRBD_dom | SEG:seg | : | : |
Description
BnaC03g64030DBnaC03g64030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0V6]
Coordinates
chrLK032272:+:33193..37744
Molecular Weight (calculated)
93801.0 Da
IEP (calculated)
6.197
GRAVY (calculated)
-0.453
Length
838 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSSNRVQVY LEDGRVGEME ICPPRESHQE DHVMKQRRVM EKVKMGIRIS RFSQPSERCP PLAVLATVSS CGLCFKLEAS PSPAQEQLSL LYSSCLRGNK
101: TAVMSLGEEE LHLVAMYAEN INNDRPCFWA FTVAPGIYDS CLVMLNLRCL GIVFDLDETL VVANTTRTFE DKIDGLQRRI NNEGDPQRIA AMVAEMKRYQ
201: DDRNLLKQYI ESDQVIDNGE VVKVQSELVP ALSENHQPLV RPLIRLPEKN IILTRINPMI RDTSVLVRMR PSWDELRSYL TAKGRKRFEV YVCTMAERDY
301: ALEMWRLLDP EGNLINASDL LARIVCVKSG FKKSLVNVFP DATCHPKMAM VIDDRLKVWE DKDQPRVYVV PAFVPYYSPQ AEAAATPVLC VTRNVACRVR
401: GGFFRDFDDS LLQRIAEISY ENDVEDIPSP PDVSHYLVPE DETSGLNENK DPLSLDGMAE VERRLKEAIS VVLPAANIDP RIAAPIQYPM ASVSAPVPVV
501: QQAPQPSAMA FPSIQFQQPI SIAKLLVPSE PSLQSSPARE EGEVPESELD PDTRRRLLIL QHGQDSRDAA PSEPPFPQRP PVQAPPPQAQ PRNGWFPVEE
601: MDPAPLHRTV SKEYPVDSER PRHQSDRMPH ENRRLPKELR PNNNLPGSHP FYGEEASWNQ SSSRISDIGR SVSATENPAE ALHEIAIKCG TKVDYRPGLV
701: ASTDLRFSVE AWFSGKKVGE GIGKSRREAL QKAAELSLQN LADIYLSVAN GDAGPSHRDA IASPLANGNM IMGGNANTFD NLPFARDETA MAVPSRSMLP
801: LHKRQGSPRS FAGMSNKRLK PDFQRSSMQR MPSSGRYS
101: TAVMSLGEEE LHLVAMYAEN INNDRPCFWA FTVAPGIYDS CLVMLNLRCL GIVFDLDETL VVANTTRTFE DKIDGLQRRI NNEGDPQRIA AMVAEMKRYQ
201: DDRNLLKQYI ESDQVIDNGE VVKVQSELVP ALSENHQPLV RPLIRLPEKN IILTRINPMI RDTSVLVRMR PSWDELRSYL TAKGRKRFEV YVCTMAERDY
301: ALEMWRLLDP EGNLINASDL LARIVCVKSG FKKSLVNVFP DATCHPKMAM VIDDRLKVWE DKDQPRVYVV PAFVPYYSPQ AEAAATPVLC VTRNVACRVR
401: GGFFRDFDDS LLQRIAEISY ENDVEDIPSP PDVSHYLVPE DETSGLNENK DPLSLDGMAE VERRLKEAIS VVLPAANIDP RIAAPIQYPM ASVSAPVPVV
501: QQAPQPSAMA FPSIQFQQPI SIAKLLVPSE PSLQSSPARE EGEVPESELD PDTRRRLLIL QHGQDSRDAA PSEPPFPQRP PVQAPPPQAQ PRNGWFPVEE
601: MDPAPLHRTV SKEYPVDSER PRHQSDRMPH ENRRLPKELR PNNNLPGSHP FYGEEASWNQ SSSRISDIGR SVSATENPAE ALHEIAIKCG TKVDYRPGLV
701: ASTDLRFSVE AWFSGKKVGE GIGKSRREAL QKAAELSLQN LADIYLSVAN GDAGPSHRDA IASPLANGNM IMGGNANTFD NLPFARDETA MAVPSRSMLP
801: LHKRQGSPRS FAGMSNKRLK PDFQRSSMQR MPSSGRYS
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.