Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031322_P001 | Maize | cytosol | 10.78 | 35.48 |
| CDX80779 | Canola | nucleus | 55.39 | 14.3 |
| CDY11208 | Canola | nucleus | 54.41 | 14.05 |
| CDX76438 | Canola | cytosol | 38.73 | 9.33 |
| CDY31421 | Canola | cytosol | 38.24 | 9.31 |
| CDX79083 | Canola | nucleus | 37.25 | 8.85 |
| CDX98696 | Canola | nucleus | 38.24 | 8.37 |
| CDX94046 | Canola | nucleus | 37.75 | 8.1 |
| CDX81143 | Canola | extracellular, plasma membrane, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX81142 | EnsemblPlantsGene:GSBRNA2T00134594001 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF10 | ProteinID:CDX81142 | ProteinID:CDX81142.1 |
| SEG:seg | UniParc:UPI0004EEC6B9 | MapMan:15.3.2.2 | : | : | : |
Description
BnaC03g03960D
Coordinates
chrLK031823:-:1914558..1915449
Molecular Weight (calculated)
24244.2 Da
IEP (calculated)
9.715
GRAVY (calculated)
-0.410
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLKQYIDND YAFDNGVLFK AQREEVRPTS DGLEKVYRHV IRFPEKNTVL NRINPEIRDT SILVKLRPAW EELRSYLTAN TRKRFEVYVC TIAERDYLLL
101: LLYDDSIGKL LFLLYEVTDR YTDQWLFSTR AFLEQCSNVK EAFGDGTSSS DYLQLDSSYR LSPIIQFLKK KKKLRTSKKF FHYSMKKLIT LIKVSNFSNH
201: TINY
101: LLYDDSIGKL LFLLYEVTDR YTDQWLFSTR AFLEQCSNVK EAFGDGTSSS DYLQLDSSYR LSPIIQFLKK KKKLRTSKKF FHYSMKKLIT LIKVSNFSNH
201: TINY
001: MNNDTSKKLG TLVSDDGPVN VYVWDMDETL ILLRSLLNGT YAESFNGSKD VKRGVEIGRM WEKHILKICD DFFFYEQVEE CNEPFLDSLR QYDDGKDLSR
101: YEFKQDDFST PTDDLNKRKL AYRHRAVAER YEKGLCPFID SESMSGLDEL YNVTDEYTDR WLSSARAFLE QCSCVEESSD GTSAIEQSSQ DIHILVTSGA
201: LIPSLVKCLL FRLDTFLRHE NVYSSIDVGK LQCFKWIKER FNHPKFRFCA IGDGWEECAA AQALQWPFVK IDLQPDSSHR FPGLTPKTVS YYFAAVYGNS
301: DADSSKE
101: YEFKQDDFST PTDDLNKRKL AYRHRAVAER YEKGLCPFID SESMSGLDEL YNVTDEYTDR WLSSARAFLE QCSCVEESSD GTSAIEQSSQ DIHILVTSGA
201: LIPSLVKCLL FRLDTFLRHE NVYSSIDVGK LQCFKWIKER FNHPKFRFCA IGDGWEECAA AQALQWPFVK IDLQPDSSHR FPGLTPKTVS YYFAAVYGNS
301: DADSSKE
Arabidopsis Description
ATEYAEyes absent homolog [Source:UniProtKB/Swiss-Prot;Acc:O82162]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.