Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038764.1-P | Field mustard | nucleus | 92.38 | 90.92 |
| CDX94046 | Canola | nucleus | 90.45 | 88.64 |
| AT4G21670.1 | Thale cress | nucleus | 81.12 | 78.18 |
| Zm00001d029743_P001 | Maize | cytosol | 9.23 | 74.78 |
| CDX76438 | Canola | cytosol | 67.6 | 74.38 |
| CDY31421 | Canola | cytosol | 66.85 | 74.34 |
| CDX79083 | Canola | nucleus | 62.88 | 68.22 |
| GSMUA_Achr11P... | Banana | cytosol | 2.68 | 64.1 |
| KRH50009 | Soybean | nucleus | 57.94 | 56.49 |
| KRH20483 | Soybean | nucleus | 57.51 | 55.83 |
| PGSC0003DMT400057635 | Potato | nucleus | 52.47 | 55.51 |
| Solyc02g078550.2.1 | Tomato | nucleus | 56.33 | 55.03 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 46.35 | 54.82 |
| KRH10835 | Soybean | nucleus | 56.33 | 54.8 |
| KRH21480 | Soybean | nucleus | 55.79 | 54.17 |
| GSMUA_Achr11P... | Banana | extracellular | 9.98 | 50.82 |
| Os02t0639000-01 | Rice | cytosol | 50.75 | 50.32 |
| EES05486 | Sorghum | cytosol | 50.11 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 49.57 | 49.84 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 49.68 | 49.68 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 50.0 | 49.47 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 49.68 | 49.2 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 47.0 | 49.16 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 50.0 | 49.16 |
| Os04t0529500-02 | Rice | extracellular | 49.14 | 49.09 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 49.89 | 49.0 |
| Zm00001d017373_P001 | Maize | nucleus | 50.54 | 48.96 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 49.46 | 48.94 |
| TraesCS2D01G369600.4 | Wheat | nucleus | 48.82 | 48.0 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 48.82 | 47.95 |
| KXG26770 | Sorghum | nucleus | 48.18 | 47.66 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 47.75 | 47.49 |
| CDX80779 | Canola | nucleus | 34.23 | 40.38 |
| CDY11208 | Canola | nucleus | 33.91 | 40.0 |
| CDX81142 | Canola | cytosol | 8.37 | 38.24 |
| CDX81143 | Canola | extracellular, plasma membrane, plastid | 5.79 | 30.51 |
Protein Annotations
| MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | EnsemblPlants:CDX98696 | ProteinID:CDX98696 | ProteinID:CDX98696.1 |
| InterPro:FCP1_dom | EnsemblPlantsGene:GSBRNA2T00106760001 | InterPro:HAD-like_sf | InterPro:IPR004274 | InterPro:IPR014720 | PFAM:PF00035 |
| PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF17 | SMART:SM00358 |
| SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI0004EE01D8 | InterPro:dsRBD_dom | SEG:seg |
Description
BnaA03g44810D
Coordinates
chrLK031906:+:727849..732963
Molecular Weight (calculated)
104634.0 Da
IEP (calculated)
6.125
GRAVY (calculated)
-0.510
Length
932 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRVQVYHED GRFGEMEIHP PPREPDDDVV RKKKQREVME QVKIGIRVTR FSQPSERCPP LAVLTTVSSC GLCFKLDAPA SSTPQEPLTL LHSSCLTDNK
101: TAVMSLGEEE LHLVAMYSED INNDRPCFWA FTVASGIYDS CLVMLNLRCL GIVFDLDETL VVANTTRTFD DKIEALQRRI SNEMDPQRIA VMVAEMKRYQ
201: DDKVLLKQYV ESDQVVENGE VIKVQSEIVP ALSDNHQPLV RPLIRLPEKN IILTRINPMV RDTSVLVRMR PSWEELRSYL TAKGRKRFEV YVCTMAERDY
301: ALEMWRLLDP EGNLINANDL LSRIVCVKAG FKKSLFNVFL DATCHPKMAL VIDDRLKVWD EKDQPRVYVV PAFAPYYSPQ AEAAATPVLC VTRNVACGVR
401: GGFFRDFDDS LLQRIAQISY ENDVEDIPSP PDVSHYLVSE DDSSGLNGNK DPLAFDGMAD AEVERRMKVI TFLGSIFSAI SGSSVVLPAA NIDPRIAAPV
501: QYPMASALSV PSPAPVPFQQ PTSIAKHLVP SEPSLQSSPA REEGEVPESE LDPDTRRRLL ILQHGQDTRD AAPSEPPFPQ RPAVQAPPPP HVQPRNGWFP
601: VEEEIDPAPL RRTVSKEYQL DSESLNRPRH QSFFPKIENS TTQSDRMPHE NRRLPKEPLR RDEQLRSNNN QPGSHPFYGE ESSWNQSSSR NSDLDFIPGR
701: SVSATENPAE VLHQIAVKCG SKVDYKPGLV ATTDLRFSVE AWLSGEKIGE GIGKSRREAL RKASEVSIQN LAGKPHRDVS PFANGNIIMG NANALDKQPF
801: ARDETAMPVP SRPTDPRLEG SMRHTGSITA LRELCASEGW EMSFQSQRPL HSDMVHRDEL HAQVEIDGRV LGEGVGSTWD EARMQAAERA LYSMRSMPPL
901: HRRQGSPRSF GGMSNKRLKP NFQRMPSSGR YS
101: TAVMSLGEEE LHLVAMYSED INNDRPCFWA FTVASGIYDS CLVMLNLRCL GIVFDLDETL VVANTTRTFD DKIEALQRRI SNEMDPQRIA VMVAEMKRYQ
201: DDKVLLKQYV ESDQVVENGE VIKVQSEIVP ALSDNHQPLV RPLIRLPEKN IILTRINPMV RDTSVLVRMR PSWEELRSYL TAKGRKRFEV YVCTMAERDY
301: ALEMWRLLDP EGNLINANDL LSRIVCVKAG FKKSLFNVFL DATCHPKMAL VIDDRLKVWD EKDQPRVYVV PAFAPYYSPQ AEAAATPVLC VTRNVACGVR
401: GGFFRDFDDS LLQRIAQISY ENDVEDIPSP PDVSHYLVSE DDSSGLNGNK DPLAFDGMAD AEVERRMKVI TFLGSIFSAI SGSSVVLPAA NIDPRIAAPV
501: QYPMASALSV PSPAPVPFQQ PTSIAKHLVP SEPSLQSSPA REEGEVPESE LDPDTRRRLL ILQHGQDTRD AAPSEPPFPQ RPAVQAPPPP HVQPRNGWFP
601: VEEEIDPAPL RRTVSKEYQL DSESLNRPRH QSFFPKIENS TTQSDRMPHE NRRLPKEPLR RDEQLRSNNN QPGSHPFYGE ESSWNQSSSR NSDLDFIPGR
701: SVSATENPAE VLHQIAVKCG SKVDYKPGLV ATTDLRFSVE AWLSGEKIGE GIGKSRREAL RKASEVSIQN LAGKPHRDVS PFANGNIIMG NANALDKQPF
801: ARDETAMPVP SRPTDPRLEG SMRHTGSITA LRELCASEGW EMSFQSQRPL HSDMVHRDEL HAQVEIDGRV LGEGVGSTWD EARMQAAERA LYSMRSMPPL
901: HRRQGSPRSF GGMSNKRLKP NFQRMPSSGR YS
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.