Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX98696 Canola nucleus 78.18 81.12
Bra038764.1-P Field mustard nucleus 78.39 80.04
CDX94046 Canola nucleus 78.18 79.5
Zm00001d029743_P001 Maize cytosol 9.31 78.26
Bra020905.1-P Field mustard cytosol 66.18 75.56
CDY31421 Canola cytosol 65.15 75.18
CDX76438 Canola cytosol 65.46 74.73
CDX79083 Canola nucleus 62.36 70.2
GSMUA_Achr11P... Banana cytosol 2.69 66.67
Bra013546.1-P Field mustard nucleus 58.95 64.92
KRH50009 Soybean nucleus 58.12 58.79
KRH10835 Soybean nucleus 58.12 58.66
KRH20483 Soybean nucleus 58.01 58.44
KRH21480 Soybean nucleus 57.5 57.92
VIT_00s0370g00040.t01 Wine grape cytosol, nucleus 46.85 57.49
PGSC0003DMT400057635 Potato nucleus 52.22 57.32
Solyc02g078550.2.1 Tomato nucleus 56.05 56.81
GSMUA_Achr11P... Banana nucleus 50.16 52.32
GSMUA_Achr8P14120_001 Banana nucleus 50.47 51.42
EES05486 Sorghum cytosol 49.53 51.28
Os02t0639000-01 Rice cytosol 49.43 50.85
Os04t0529500-02 Rice extracellular 49.02 50.8
HORVU2Hr1G091030.9 Barley endoplasmic reticulum, vacuole 46.74 50.73
HORVU6Hr1G060230.12 Barley nucleus 48.81 50.64
TraesCS2A01G373400.3 Wheat nucleus 49.53 50.53
TraesCS6B01G264000.3 Wheat nucleus 49.02 50.32
TraesCS6A01G235300.4 Wheat nucleus 48.91 50.27
TraesCS6D01G218000.3 Wheat nucleus 48.91 50.21
Zm00001d017373_P001 Maize nucleus 49.02 49.27
TraesCS2D01G369600.4 Wheat nucleus 48.29 49.26
TraesCS2B01G390500.3 Wheat nucleus 48.29 49.21
GSMUA_Achr11P... Banana extracellular 9.31 49.18
KXG26770 Sorghum nucleus 47.47 48.73
Zm00001d051242_P002 Maize cytosol, nucleus, plastid 46.54 48.03
AT5G01270.2 Thale cress nucleus 33.92 42.38
Protein Annotations
MapMan:15.3.2.2MapMan:18.4.25.1.5Gene3D:3.30.160.20EntrezGene:828254ProteinID:AEE84488.1EMBL:AK221944
EMBL:AK229289ArrayExpress:AT4G21670EnsemblPlantsGene:AT4G21670RefSeq:AT4G21670TAIR:AT4G21670RefSeq:AT4G21670-TAIR-G
EnsemblPlants:AT4G21670.1TAIR:AT4G21670.1EMBL:AY557186Unigene:At.32611ProteinID:CAB36811.1ProteinID:CAB81274.1
Symbol:CPL1ncoils:CoilInterPro:FCP1_domGO:GO:0000184GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003824GO:GO:0004647GO:GO:0004721GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0006950GO:GO:0007154GO:GO:0007165
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008420GO:GO:0009056GO:GO:0009058
GO:GO:0009611GO:GO:0009628GO:GO:0009651GO:GO:0009719GO:GO:0009738GO:GO:0009987
GO:GO:0016591GO:GO:0016607GO:GO:0016787GO:GO:0016791GO:GO:0019538GO:GO:0045892
GO:GO:0046872GO:GO:0070940InterPro:HAD-like_sfInterPro:IPR004274InterPro:IPR014720RefSeq:NP_193898.3
PFAM:PF00035PFAM:PF03031PO:PO:0000293PFscan:PS50137PFscan:PS50969PANTHER:PTHR23081
PANTHER:PTHR23081:SF17UniProt:Q5YDB6SMART:SM00358SMART:SM00577SUPFAM:SSF54768SUPFAM:SSF56784
UniParc:UPI000044EC6EInterPro:dsRBD_domSEG:seg:::
Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
Coordinates
chr4:+:11510989..11517396
Molecular Weight (calculated)
108427.0 Da
IEP (calculated)
6.082
GRAVY (calculated)
-0.534
Length
967 amino acids
Sequence
(BLAST)
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.