CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90312
EER92481
EER97421
EES01796
EES02150
EES06877
EES09373
EES15338
EES16732
EES18892
KXG22802
KXG29470
KXG31464
OQU77119
OQU82704

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21670.1	KXG22802	AT1G09700.1	23141542
AT4G21670.1	OQU82704	AT1G09700.1	23141542
AT4G21670.1	EER97421	AT1G20110.1	18541146
AT4G21670.1	OQU77119	AT1G20110.1	18541146
AT4G21670.1	EES09373	AT1G35670.1	19130088
AT4G21670.1	EES16732	AT1G35670.1	19130088
AT4G21670.1	EER90312	AT2G27100.1	23141542
AT4G21670.1	EES15338	AT2G27100.1	23141542
AT4G21670.1	KXG29470	AT2G27100.1	23141542
AT4G21670.1	EER92481	AT2G28840.1	18541146
AT4G21670.1	EES02150	AT2G28840.1	18541146
AT4G21670.1	EES18892	AT2G28840.1	18541146
AT4G21670.1	EES06877	AT3G26730.1	18541146
AT4G21670.1	KXG31464	AT3G49250.1	18541146
AT4G21670.1	EES01796	AT3G54290.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029743_P001	Maize	cytosol	11.99	97.39
Zm00001d017373_P001	Maize	nucleus	93.9	91.16
Zm00001d051242_P002	Maize	cytosol, nucleus, plastid	90.69	90.39
Os02t0639000-01	Rice	cytosol	85.76	85.21
HORVU6Hr1G060230.12	Barley	nucleus	83.73	83.91
TraesCS6B01G264000.3	Wheat	nucleus	83.83	83.12
TraesCS6A01G235300.4	Wheat	nucleus	83.73	83.1
TraesCS6D01G218000.3	Wheat	nucleus	83.73	83.01
GSMUA_Achr11P...	Banana	cytosol	3.0	71.79
KXG26770	Sorghum	nucleus	70.66	70.06
GSMUA_Achr8P14120_001	Banana	nucleus	60.71	59.75
GSMUA_Achr11P...	Banana	nucleus	58.78	59.22
PGSC0003DMT400057635	Potato	nucleus	53.1	56.3
Solyc02g078550.2.1	Tomato	nucleus	56.96	55.77
KRH20483	Soybean	nucleus	55.25	53.75
KRH50009	Soybean	nucleus	54.93	53.66
VIT_00s0370g00040.t01	Wine grape	cytosol, nucleus	44.65	52.92
KRH10835	Soybean	nucleus	53.85	52.51
GSMUA_Achr11P...	Banana	extracellular	10.17	51.91
KRH21480	Soybean	nucleus	53.0	51.56
Bra020905.1-P	Field mustard	cytosol	46.36	51.12
CDX76438	Canola	cytosol	46.25	51.0
CDY31421	Canola	cytosol	45.72	50.95
Bra038764.1-P	Field mustard	nucleus	50.86	50.16
CDX98696	Canola	nucleus	50.0	50.11
AT4G21670.1	Thale cress	nucleus	51.28	49.53
CDX94046	Canola	nucleus	50.43	49.53
CDX79083	Canola	nucleus	43.36	47.15
Bra013546.1-P	Field mustard	nucleus	42.51	45.22
KXG33725	Sorghum	cytosol, nucleus, plastid	34.9	43.58
VIT_00s0370g00030.t01	Wine grape	nucleus, plastid	7.17	41.88

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	EntrezGene:8074805	UniProt:C5XY97	EnsemblPlants:EES05486
ProteinID:EES05486	ProteinID:EES05486.1	InterPro:FCP1_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008420
GO:GO:0009058	GO:GO:0009987	GO:GO:0016591	GO:GO:0016787	GO:GO:0019538	GO:GO:0070940
InterPro:HAD-like_sf	InterPro:IPR004274	InterPro:IPR014720	PFAM:PF00035	PFAM:PF03031	PFscan:PS50137
PFscan:PS50969	PANTHER:PTHR23081	PANTHER:PTHR23081:SF11	SMART:SM00358	SMART:SM00577	EnsemblPlantsGene:SORBI_3004G227600
SUPFAM:SSF54768	SUPFAM:SSF56784	UniParc:UPI0001A85598	RefSeq:XP_002452510.1	InterPro:dsRBD_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:57725821..57736065

Molecular Weight (calculated)

103804.0 Da

IEP (calculated)

6.691

GRAVY (calculated)

-0.441

Length

934 amino acids

Sequence
(BLAST)

001: MFKSMVYYGN TSIGEVEVWP KGEASAGLAV AAWAREIRVD RLSPPSERCP PLAVMHTVAV GARCLVMESR PPVAADVAPM PLVAMHAACL RDNKTAVVPL
101: GDGELHLVAM TSRRNLTNHA CFWGYKLPFG LYNSCLTMLN LRCLGIVFDL DETLIVANTS RSFEDRIDGL QRKLSNETDP QRRNGMLSEI KRYQDDKSIL
201: KQYIEGDQVY DDGKVYKAQP EIVPPLSDNQ QPMTRPVIRL QDKNIILTRI NPLIRDTSVL VRLRPAWEDL RSYLIARGRK RFEVYVCTMA ERDYALEMWR
301: LLDPDSRLIN SVQLHDRMVC VKSGLKKSLL NVFHDGSCHP GMALVIDDRL KVWDEKDQLR VHVVPAFTPY YAPQAEANCS IPVLCVARNV ACNVRGGFFK
401: DFDEGLLPRI SNVHYEDEVN DISSAPDVGN YLITEDENAA LVNGNRDSLP FDGMADAEVE RRMKEANAQA FHQTAGNFVM PVAPAQNFVS SSVAPLAPPL
501: GVMPPTFSQP VVQPGFSDSL QGSPAREEGE VPESELDPDT RRRLLILQHG QDIRDPTPPL PAIPPVQVPV PPVQPHGNWF PTEDGLNPSN LNRGSAGFTV
601: ESDPMLYEKK QPPHPSFFHG GDSPMSSDRF GYQNQRFPSQ LPHTEDHHML QNHAPPKYRS FSGEELAARH VPSSQRNNQI ESGRHFAQYA GTSAGILDGI
701: ALKCGSKVEY RSTLCDTAEL QFSIEVWIVG EKVGEGIGRT RREAQHKAAE MSLRNLANKY LSSDPNKLTD MKENGFSGNR NVFGYSGNTR DDMLPLSSTS
801: EESRFMKMEN NSRKTGGSVA ALKELCTVEG YNLVFQERPS PADGLVGKES YAQVEVGGQI LGKGVGLTWE EAKLQAADEA LGTLRSMLGQ LAHKRSGSPR
901: SLAPNFNKRF KPDFPRTVQR VPYGTYSRIE GHVP

Best Arabidopsis Sequence Match ( AT4G21670.1 )
(BLAST)

001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS

Arabidopsis Description

CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.