CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05486
KXG26770

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54290.1	EES05486	AT4G21670.1	18541146
AT3G54290.1	KXG26770	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042764_P001	Maize	plastid	98.26	98.5
TraesCS3A01G374300.1	Wheat	mitochondrion	55.72	89.6
Os01t0861700-00	Rice	plasma membrane	85.82	84.98
Zm00001d012290_P001	Maize	cytosol	44.03	83.89
HORVU3Hr1G084020.2	Barley	plastid	83.58	82.56
GSMUA_Achr3P22630_001	Banana	mitochondrion, plastid	39.3	46.2
VIT_13s0101g00520.t01	Wine grape	cytosol	24.13	35.53
PGSC0003DMT400061575	Potato	cytosol	28.61	35.28
Solyc11g006830.1.1	Tomato	cytosol	28.36	34.97
KRG90752	Soybean	cytosol	27.86	33.94
KRH36010	Soybean	cytosol	27.36	33.64
AT3G54290.1	Thale cress	plastid	28.36	32.57
CDX76154	Canola	plastid	25.62	31.6
Bra014824.1-P	Field mustard	plastid	25.62	31.6
KRH33267	Soybean	cytosol	26.87	31.4
CDY13198	Canola	plastid	21.89	30.45
Bra007062.1-P	Field mustard	plastid	26.12	28.93
CDX78227	Canola	cytosol, plastid	25.87	28.49
CDX73491	Canola	plastid	24.88	27.55

Protein Annotations

EnsemblPlants:EES01796	EnsemblPlantsGene:SORBI_3003G364900	EntrezGene:8058951	Gene3D:1.20.120.520	InterPro:Haemerythrin-like	PANTHER:PTHR35739
PFAM:PF01814	ProteinID:EES01796	ProteinID:EES01796.1	RefSeq:XP_002456676.1	SEG:seg	UniParc:UPI0001A84ED8
UniProt:C5XQJ8	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:68176221..68180153

Molecular Weight (calculated)

44182.2 Da

IEP (calculated)

8.791

GRAVY (calculated)

-0.338

Length

402 amino acids

Sequence
(BLAST)

001: MGNCSPSPRR RRRPTEPGSP ALGSNVSAPT VTVNSVSVST YALARSPSVS AAAVDAEDAG VVRVYGSDGC PVAWRLRVSL LYKAAAPLHF TPSEAAPLGR
101: PVLRLSAADP EVCGTADELL RLVDARFEGK PRVAPPERPR AASPSAAAAA EVAELVRLQH RSAERHLEGV AAKVAEMVKK GKKSGKGRNV VEGAEVRRLG
201: KWYGDAMEVM LEHARMEETL IFPDIQRASF PGVCDKVNEQ HGRHLPMMNG IKEDIKTLLT LELGSPLFHE VAVNLSVRLK ALQDHTKEHF KEEESDLLPR
301: LEQVRRMQRE EGKVSDKSSS AWASEAVATM EMTHSKLFPF FMTGLLPQEA MQYLDLVCRC TKNTRHLVSM LRSLAERLED ANPSIIHNNP TKLYEHLLVK
401: SP

Best Arabidopsis Sequence Match ( AT3G54290.1 )
(BLAST)

001: MGTCFSSSTK STAEISPFDL VVKPPPPSAA ATAPPTQRIP TAKTETSTVS FTATVRLYGP PNSLVTSYLR FALLHKKVPL RFVPSEDQKP TIQVGSETVS
101: GSREVLLRYI EDKFPEPRLM IWKFNLEGFD EATPLIVKMI WLQHRSMLWH MERMLRWSED LAARGGKKAV DPSVGTPKME IRKFAKSYTH LQELMLEHAQ
201: MEERILFPVL ESVDRGMCKS ANEEHGRELP MMNGIKEDIK SIGVLDSGIC SEALFSLASR FKSLQMMCKT HFEEEEKDLL PMVEAAEMGK EKQKKLMNQS
301: LEVMSGTHSN SFDFLLEGLT PQEAMQYIDL LMTFGDPNLI SSFLCSDVVD

Arabidopsis Description

At3g54290 [Source:UniProtKB/TrEMBL;Acc:Q8RWC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.